Chionomys nivalis (European snow vole): 130863667
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Entry
130863667 CDS
T11437
Symbol
Pnldc1
Name
(RefSeq) poly(A)-specific ribonuclease PNLDC1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
cnl Chionomys nivalis (European snow vole)
Pathway
cnl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cnl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130863667 (Pnldc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cnl03019
]
130863667 (Pnldc1)
Enzymes [BR:
cnl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
130863667 (Pnldc1)
Messenger RNA biogenesis [BR:
cnl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
130863667 (Pnldc1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
130863667
NCBI-ProteinID:
XP_057609838
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All DBs
Position
2:complement(11020410..11042565)
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AA seq
581 aa
AA seq
DB search
MKATLADRRYQGCFQFRLKRATCTSFKALRSGNAWAARGRIRRALELAAMDVGADEFEQS
LPLLQELVAGADFVGLDIEFTGLRSNLSRPQQISLFDLPSEWYVKTRQSVQQFTICQIGL
SVFSSIEGESNKYVAHSCNFFLFPTTFGILDSEFSFQASSVQFLNQYGFDYNKFLKNGIP
YMNEEQEKKIKRSILRGNWRVRSSLDKDQIKVVIDKVTQWLDLAEEGDQMTLPGIAGFQA
FEVQLVLRQALPNIWTVLKDEGVIVKKVSQPHRWYLEHDSCDQISCWKEQILLSARGFSV
FFQMLVKAQKPLVGHNMMMDLLHLHEKFFRPLPESYDQFKQNIHSLFPVLIDTKNVTKDI
WKELRFPRVSNLSEVYDVLSSNLNPTKNSGPEIIHARQCKKYAETKCPHEAAYDAFLCGS
VLLKVAHLLLERVHGTVPVDDEPTFPQYLDVLAPYVNQVNLIRAGVPKINFSGPDYPSIR
PPVLILTVRRWPGVSEHQVYREFQNLCKFDVRRFTRSQFLLLTNKFKDARNVLKEYRSHP
TLQVSLYRYWRHSPNITCLLQVCSIVTTWAMVAFVLGRFSP
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atgaaggccacactagctgatcgccgataccaaggatgctttcagttccgactgaagcgg
gccacgtgcacgagctttaaggccctgcgcagcggaaacgcgtgggcagcacgcggccgc
atccggcgcgccctggaactagcggctatggacgtgggtgctgatgagtttgaacagagc
ctcccactcctgcaggagcttgtcgcgggtgcggacttcgtgggtctcgacatagagttc
acaggtctgcgttcaaacttgtcccggccccagcagatcagtctttttgatttgccatct
gaatggtatgtgaagacccggcagagcgttcagcaatttacaatctgccagattgggttg
tctgtgttttccagcatcgaaggagagtcaaacaagtatgtagcccactcctgtaacttc
tttctctttcctacaacatttgggatcttggactcagagttctctttccaggcgtctagt
gttcagtttttgaatcagtatggcttcgactataacaagttcctcaaaaatggcatcccg
tacatgaatgaagagcaggagaagaagattaagcgtagtatcctgagagggaactggaga
gtccggagctctctggataaagaccaaattaaggtggtgattgataaggtgactcagtgg
ctggacctggctgaggaaggtgaccagatgactctgcccggcattgctgggttccaagcc
tttgaggtccagctggtgctgaggcaggccctccccaacatctggacagtgctgaaggat
gaaggggtgattgtgaagaaagtcagtcagccacatcgctggtaccttgagcacgactct
tgcgaccaaatcagctgttggaaggagcagattcttctctctgcaagaggcttttctgtc
ttttttcagatgctggtgaaagcccagaagcccttggtaggacacaacatgatgatggac
cttctgcatctccatgagaagttcttccgacctcttccagaaagctacgaccagtttaag
cagaacatccacagcctgttccctgtcctcattgacaccaagaatgtgacaaaggacatc
tggaaggaactgcgtttcccacgagtctccaacctctcagaagtgtatgacgtgctgagc
agtaacctgaatcccactaagaattctggaccagagattattcatgcaagacagtgtaaa
aaatacgcagagaccaagtgcccccacgaagctgcgtatgatgcctttctctgtgggtca
gttcttctgaaagtggcgcacttgctcctggagagggtgcatggcactgttcctgtcgat
gacgagcccaccttccctcagtacctcgacgtgctggcgccatatgtgaaccaagtgaat
ctcatccgagctggggttcctaaaattaacttttctggcccggattaccccagtatccgc
cctcctgtgctcatcctcaccgtcaggaggtggcctggggtcagtgagcaccaggtctac
cgtgagttccagaatctctgcaagtttgatgtcaggcggttcactcgaagccagtttctg
ctcctgaccaataagtttaaggatgcccgcaatgtcttgaaggagtacaggagccaccca
accctgcaggtctcgctgtaccggtactggagacattcccccaacatcacctgcctgtta
caagtctgcagcattgtcaccacctgggccatggttgcattcgtcctgggaagattcagc
ccctga
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