Chionomys nivalis (European snow vole): 130865194
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Entry
130865194 CDS
T11437
Symbol
Pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
cnl Chionomys nivalis (European snow vole)
Pathway
cnl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cnl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
130865194 (Pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cnl03021
]
130865194 (Pcf11)
03019 Messenger RNA biogenesis [BR:
cnl03019
]
130865194 (Pcf11)
Transcription machinery [BR:
cnl03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
130865194 (Pcf11)
Messenger RNA biogenesis [BR:
cnl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
130865194 (Pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
Motif
Other DBs
NCBI-GeneID:
130865194
NCBI-ProteinID:
XP_057612080
LinkDB
All DBs
Position
23:complement(8393211..8418457)
Genome browser
AA seq
1683 aa
AA seq
DB search
MSEPTPAEAGAAGAREDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEA
QTAKAPSSEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRS
TWDEIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEESSTPGPVV
SSPSISTPPIVPEIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQAKAQLAVSLSV
QQETANLGPGSGSSKLHVSQIPTMTVKTPHQVPVQSDKSRPGSSLQIQDLKGTNRDPRLN
RMSQHSSHGKEQSHRKEFVMNTLNQSDIKTSKTIPSEKLNSSKQEKSKSSERITKKELDQ
LDSKSKSKSPSPLKNKLSHPKDLKNQDSESMRMSDMNKRDPRLKKHLQDKTEGKDEDVKE
KRKTTEKKDKDDHMKSSEHRLMGSRNKIINGIVQKQDMVTEELDKQGTKPGRSSTRKRSR
SRSPKSRSPIIHSPKRRDRRSPKRRQRSSMSPTLAPKAGKMRQSGLKQSHMEEFPPSSRE
ERSIKRSTKQDVRDPRRLKKMDEERPQETASQHSMKSGAEPKENIENWQSSKSAKRWKSG
WEENKSLQQGDEHSKPPHLRHRESWSSTKGILSPRTPKQQHRLSVDANLQIPKELTLASK
RELLQKTSERLASGEITQDEFLVVVHQIRQLFQYQEGKHRCNVRDSPTEENKGGLKKKPL
LSDAELTYYEHKAKLKRTQVQHSFPRLDLLDPDLFDYPLTDALLSGIECEPSKSKHASRN
SGAQFDRKEQFSERTRRLSPVSGSRTYAENLSPHEGRRRHDEQVSAKGVREEQRSPFNDR
FPLKRPRYEDSDKTFVDGPTSRFAGLDTNQRLTALAEDRPLFDGPGRPSVTRDGPSKMIF
EGPNKLSPRIDGPPAPGSLRFDGSPGQMGGGGPMRFEGPQGQLGGGCPLRFEGPPGPVGT
PLRFEGPIGQGGGGGFRFDGSPSLRFEGSAGGLRFEGPGGQPVGGLRFEGHRGQPVGGLR
FEGPHGQPVGSLRFENPRGQPVGGLRFEGGHGPSGSAIRFDGPHGQPSGGIRFEGPLLQQ
GVGMRFEGPHGQSVAGLRFEGHNQLSGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFEGP
VPGGGMRIEGPLGQGGPRFEGCHSLRFDGQPGQPSLLPRFDGLHGQPGPRFERTGQPGPQ
RFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQGNRFDNHPSQRLESVPFNQTG
PYNDPAGNAFNVPSQGLQFQRHEQIFDTPQGPNFNGPHGPGNQNFPNPLNRASGHYFEEK
NLQSSQFGNFGNLPTPMSAGNIQTSQQVLTGVAQPVAFGQGQQFLPVHPQNPGAFIQNPS
GGLPKAYPDNHLSQVDVNELFSKLLKTGILKLSQPDSATTQVNEAVAQPPPEEEEDQNED
QDVPDLTNFTVEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNRTE
KDVSRKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEFQSV
PAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYEDYQNTSSFDCTP
SPSKTPVENPLNIMLNIVKNELQEPCESPKVKEEQIDAPPACSEESVATPTEIKTENDTV
ESV
NT seq
5052 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagccgacgccggccgaggccggggctgcgggggcccgggaggacgcctgtcgg
gattatcagtcgtcgctggaagacctgaccttcaatagcaaaccgcacatcaatatgctg
accattctagccgaggagaacctgcccttcgccaaggagatcgtctctctcatcgaggcc
caaaccgccaaggctccttcctcagagaagcttcctgttatgtaccttatggattctatc
gtgaaaaacgttggaagagagtatctcactgcctttactaaaaatctagttgcaacattt
atttgtgtgtttgaaaaggtggatgaaaatactagaaaaagtttatttaaattacgttcc
acatgggatgaaatattccctttgaagaaactttatgccttggatgtcagagtcaattca
ttagatcctgcctggcctattaaacctctgccccctaatgtgaatacatctagcatccat
gtgaatccaaaatttttaaataaatcgcctgaggagtcttcaacacctggcccagtggtc
agttcccccagtatctccactcctccaattgtacctgaaatacaaaagaatcttacccaa
gaacaactaataaggcagcagttactcgcaaaacaaaaacagttattagagcttcagcag
aaaaagctggagcttgagttagaacaagctaaggcacaactggcagtatctcttagcgtt
cagcaagagacagccaatttgggtcctggatcaggatcatctaagttacatgtttcacag
attcccactatgactgttaaaactccacatcaggttcctgtgcaatctgacaaaagccga
ccaggttcatccttacaaattcaagacttgaaaggaactaaccgggatcctcgtcttaac
aggatgagccaacattcatctcatggcaaagaacagagtcataggaaagaatttgtaatg
aacacattaaatcagtctgatattaaaacaagtaaaactataccctctgaaaaactaaat
tcttccaagcaagaaaaaagtaaatcaagtgaaagaataaccaagaaggaacttgaccaa
ttagattctaaatctaaatctaaatcaccatcacctttgaaaaacaaattatcacaccca
aaagacttgaaaaatcaagactctgaaagtatgaggatgtctgatatgaacaagagagat
ccacgattaaaaaagcatcttcaggataaaactgagggcaaagatgaggatgtaaaagaa
aaaagaaaaactacagaaaagaaggataaagatgaccacatgaaatcatcagaacataga
ctgatgggaagtagaaataaaatcataaatggcattgtccaaaaacaggacatggttaca
gaagaattggataaacaggggacaaaaccagggagatcaagtactcgaaagagatccaga
tcaaggtcacctaaatctcggtcaccaattatacattccccaaagagaagagatagacgg
tcacccaaacgaaggcaaagaagtagtatgtctccaactttggcccccaaagctggaaag
atgcgtcagtcaggacttaaacagtcacatatggaagagttcccaccatcttccagagaa
gaaagaagtattaagagaagtactaagcaggatgttcgagatcccagacgactgaaaaag
atggatgaggaacggccgcaagaaactgcaagtcaacattctatgaagtcaggtgctgag
ccaaaggagaatatagagaattggcaaagctccaagtctgccaaaagatggaaatctggt
tgggaagaaaataaaagcttacagcagggtgatgaacatagtaaacctcctcatctaagg
catagggagagctggtcaagcactaaaggaatcttgtcacctcgaacgccaaagcagcaa
catcgattaagtgttgatgccaatcttcagattcctaaagagttaacccttgcaagcaaa
agagaattacttcaaaagacgagtgaacgtttagcttctggtgaaattacacaggatgag
ttccttgttgttgtacatcaaattcgacagctatttcagtatcaagaaggtaaacataga
tgcaatgtacgggatagtcctacagaagaaaataaaggtggattaaaaaagaaacctctc
ttatctgatgctgaattaacctactatgaacataaagcaaaactgaaaaggacacaggtt
cagcattcatttccaagacttgatctcttagatcctgatctttttgactaccctttgact
gatgccttgttgtctggaatagaatgtgagccatccaaaagtaaacatgcaagtaggaat
agtggagcacagtttgacagaaaagaacaatttagtgaaagaacaagacgtctttctcct
gtatctgggagtcgtacttatgctgagaatctttcaccccatgagggccggagaagacat
gacgagcaagtctctgctaaaggtgtacgagaggagcagagatctccattcaatgatcgt
tttccacttaagcgacctagatatgaagattcagataaaacatttgtagatggcccaaca
tcaagatttgctggccttgatacaaatcagcgacttacagctttagctgaagaccggcca
ttatttgatggacctggtaggccatctgtgaccagagatggcccgagcaagatgattttt
gaaggacctaataaattaagccctagaattgatggacctcctgcaccaggttctcttcgg
tttgatgggtcaccaggacaaatggggggaggaggccctatgaggtttgaaggaccacaa
ggtcagttaggaggtgggtgccctttgagatttgaaggtcctccaggaccagtaggaaca
cctctgcggtttgaagggccaattggtcaaggaggaggaggtggctttcgatttgatggt
tcacctagtctgaggtttgagggatctgcaggtggtttgcgatttgaagggccagggggt
cagcctgtgggtggtctcaggtttgaaggacatcgtggtcaacctgtgggtggtctgagg
tttgagggacctcatggacagcctgtgggcagtcttagatttgaaaatcctagaggtcag
cctgtaggtggacttagatttgaggggggtcatggtccatcagggtctgcaattaggttt
gatgggcctcatggtcagccaagtggtggtatcagatttgagggccctttgctgcagcaa
ggagttggaatgaggtttgagggtccccatggtcagtccgtagctggtctgagatttgaa
ggacataatcaactaagtgggaaccttaggtttgagggaccacatggtcagccgggggtt
ggcatcaggtttgaaggacctttagttcaacaaggaggtggaatgaggtttgagggtcct
gtaccaggaggtggcatgagaattgaagggcctctgggtcaaggtggtcctagattcgaa
ggttgtcactctttaaggtttgatggacagccaggtcagccatcccttttaccaagattt
gatggattacatggccaaccaggtcctaggtttgaaagaactggtcagccaggtccacag
agatttgatgggccacctggacagcaggttcaaccaaggtttgatggtgtacctcaaaga
tttgatgggccacaacaccagcaagcatcaagatttgatattcctcttggcctgcaaggc
aaccgatttgacaatcatccttcacaaaggcttgaatctgtacctttcaatcagactggc
ccatataatgatccagctggcaatgcttttaatgttccatctcaaggattacagttccaa
agacatgagcaaatatttgatacacctcaaggaccaaattttaatggacctcatggccct
ggaaaccagaatttcccaaatccccttaacagagcttcaggacactattttgaggaaaag
aatcttcagagttctcagtttggaaactttggcaatttacctactccgatgtcagcagga
aatatccagacatctcaacaggttctgactggcgttgctcagccagtagcgtttggccaa
ggacaacaatttttaccagttcatccacagaatcctggagcttttattcaaaatccttca
ggaggtctgcctaaggcatatcctgataatcatctcagtcaggtggatgtaaatgaattg
ttttcaaaactactaaaaacaggaattctcaaattgtcacagcctgattcagctacaaca
caggtaaatgaggctgttgctcaacctcctcctgaagaagaggaggatcagaatgaagat
caggatgttccagatcttacgaatttcacagttgaggaattgaaacaacgttatgacagt
gttataaaccgactgtacactgggattcagtgttactcctgtggaatgaggtttacgacg
tcccagacagatgtttatgcagatcacttggactggcattatcggcaaaatagaactgag
aaagatgttagcagaaaagtcactcacagacgctggtactacagtttaacagactggata
gaatttgaagaaatagctgatctggaagaacgtgcaaaaagccagttttttgaaaaggtt
catgaagaggttgttcttaaaactcaggaggcagctaaagaaaaggagttccaaagtgta
cctgctggaccagctggagcagttgagagttgtgaaatttgtcaagaacagtttgaacaa
tactgggatgaagaggaggaagaatggcacttaaaaaatgctattagagtagacggaaag
atttatcatccatcgtgttatgaagattatcaaaatacatcttcttttgattgtacacca
tctcccagcaagacaccagttgaaaaccctttgaacattatgttgaacattgtcaaaaat
gaattacaagaaccctgtgaaagtcccaaagttaaggaagagcaaattgatgccccacca
gcttgctcggaagaaagtgtagcaacacccactgaaattaaaacagaaaatgatacagtt
gagtcagtttaa
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integrated database retrieval system
