Chionomys nivalis (European snow vole): 130869344
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Entry
130869344 CDS
T11437
Symbol
Afdn
Name
(RefSeq) afadin isoform X1
KO
K05702
afadin
Organism
cnl Chionomys nivalis (European snow vole)
Pathway
cnl04014
Ras signaling pathway
cnl04015
Rap1 signaling pathway
cnl04024
cAMP signaling pathway
cnl04517
IgSF CAM signaling
cnl04519
Cadherin signaling
cnl04520
Adherens junction
cnl04530
Tight junction
cnl04670
Leukocyte transendothelial migration
Brite
KEGG Orthology (KO) [BR:
cnl00001
]
09130 Environmental Information Processing
09132 Signal transduction
04014 Ras signaling pathway
130869344 (Afdn)
04015 Rap1 signaling pathway
130869344 (Afdn)
04024 cAMP signaling pathway
130869344 (Afdn)
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
130869344 (Afdn)
04519 Cadherin signaling
130869344 (Afdn)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
130869344 (Afdn)
04530 Tight junction
130869344 (Afdn)
09150 Organismal Systems
09151 Immune system
04670 Leukocyte transendothelial migration
130869344 (Afdn)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RA
AFDN
DIL
PDZ
FHA
PDZ_6
RA_2
PDZ_2
RA_3
Yop-YscD_cpl
RASSF8-10_RA
Motif
Other DBs
NCBI-GeneID:
130869344
NCBI-ProteinID:
XP_057617327
LinkDB
All DBs
Position
2
Genome browser
AA seq
1915 aa
AA seq
DB search
MSAGGRDEERRKLADIIHHWNANRLDLFEISQPTEDLEFHGVMRFYFQDKAAGNFATKCI
RVSSTATTQDVIETLAEKFRPDMRMLSSPKYSLYEVHVSGEERRLDIDEKPLVVQLNWNK
DDREGRFVLKNENDAIPAKKAQSNGPEKQDKEGVIQNFKRTLSKKEKKEKKKREKEALRQ
ASDKEERPSQGDDSENSRLAAEVYKDMPETSFTRTISNPEVVMKRRRQQKLEKRMQEFRS
SDGRPDSGGTLRIYADSLKPNIPYKTILLSTTDSADFAVAESLEKYGLEKENPKDYCIAR
VMLPPGAQHSDERGAKEVILDDDECPLQIFREWPSDKGILVFQLKRRPPDYIPKKMKKHV
EGKPLKGKDRVDGSGYGSALPPEKLPYLVELSPGRRNHFAYYSYHTYEDGSDSRDKPKLY
RLQLSVTEVGTEKFDDNSIQLFGPGIQPHHCDLTNMDGVVTVTPRSMDAETYVDGQRISE
TTMLQSGMKVQFGTSHVFKFVDPIQDHVLSKRSVDGGLMVKGPRHKPGRAVQETTFDLGG
DIHSGTALPASRSTTRLDSDRMSSASSTAERGMVKPVIRLDQEQDYRRRESRTQDAVGPE
LILPASIEFRESSEDSFLSAIINYTNSSTVHFKLSPTYVLYMACRYVLSSQHRPDISPAE
RTHKAIAVVNKMVSMMEGVIQEVDQVDQKQKNIAGALAFWMANASELLNFIKQDRDLSRI
TLDAQDVLAHLVQMAFKYLVHCLQSELNNYMPAFLDDPEENSLQRPKIDDVLHTLTGAMS
LLRRCRVNAALTIQLFSQLFHFINMWLFNRLVTDPDSGLCSHYWGAIIRQQLGHIEAWAE
KQGLELAADCHLSRIVQATTLLTMDKYVPDDIPNINSTCFKLNSLQLQALLQNYHCAPDE
PVIPTDLIESVVAVAENTADELARSDGRDVQLEEDPDLQLPFLLPEDGYSCDVVRNIPNG
LQEFLDPLCQRGFCRLIPHTRSPGTWTIYFEGADYESHLMRENTELAQPLRKEPEIITVT
LKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQ
ERAAELMTRTSSVVTLEVAKQGAIYHGLATLLNQPSPMMQRISDRRGSGKPRPKSEGFEL
YNNSAQNGSPESPQLPWTEYSEPKKLPGDDRLMKNRADHRSSPNVANQPPSPGGKSPYAS
GTAAKITSVSTGNLCTEEQTPPPRPEAYPIPTQTYTREYFTFPASKSQDRMAPPQNQWPN
YEEKPHMHTESNHSSIAIQRVTRSQEELREEKVYQLERHQVEAGLDRKCDSDMWINQSSS
VDSSTSSQEHLNHSSKSVTPASTLTKSGPGRWKTPAAVLPTPVAVSQPIRTDLPPPPPPP
PVHYTSDFDGIPVDLPLPPPPTNQVGPQSAQVAAAERKKREEHQRWYEKEKARLEEERER
KRREQERKLGQMRTQSLNPASFSPLATLTKPEKPSTLQRPQETVIRELQPQQQPRTIERR
DLQYITISKEELSSGDSLSPDPWKRDAREKLEKQQQMHIVDMLSKEIHELQNKVDRTAEE
SDRLRKLMLEWQFQKRLQESKQKDEDDEEEEDDDVDTMLIMQRLEAERRARQTAMPAISV
LDLLQDEERRRQQQLEEMRKREAEDRVRQEEDRRHQEEERVKRDAEEKRRQEEGYYSRLE
AERRRQHDEAARRLLEPEDPGLSRPPLPRDYEPPSLSPAPSAPPPPPQRNASYLKTQVLS
PDSLFTAKFVAYDDEEEEEDCGPAGQDKYPSTRKSHEHLPLAAPKPQQPRPASDGIFLSN
SFQPPLAKANSTANRAGPPPPPPGKPSFYRPVHWKGPYSSYTGSAGTILGAHDASRDPRE
KHTRSQEADSPGSSGAPENLTFKERQRLFSQGQDVSDKVKASRKLTELENELNTK
NT seq
5748 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcgggcggccgcgacgaggagcggcggaagctggccgacatcattcaccattgg
aacgccaaccggctggacctgttcgagatcagccagccgaccgaggatctggagtttcat
ggagtcatgagattttattttcaagataaagctgctggaaactttgcaacaaaatgcatt
cgggtatctagcacggcaaccactcaagatgtgattgaaacactggcagagaagttccgc
cctgatatgcgcatgctgtcctctcccaaatattccctctatgaagtgcatgtcagtgga
gaagaaagaagattagacattgatgagaaacctctagttgtgcagttgaactggaacaaa
gatgatcgggaaggtagattcgtccttaagaatgaaaatgacgccattcctgccaagaag
gctcagagtaatggacctgagaagcaggacaaagaaggcgtcattcagaacttcaagaga
actctttcaaagaaagaaaagaaggaaaaaaagaagagagaaaaagaggcactgagacaa
gcctctgataaggaagaaaggccttcacaaggggatgacagcgagaattctcgactggct
gctgaagtctacaaagacatgcctgagacgagctttactcggacaatttctaatcctgag
gtagtaatgaaacggcggcggcagcaaaaacttgagaaaagaatgcaagagtttcggagc
tcagacgggcggcctgactcaggtggaacattgagaatatatgcagatagtttaaaacca
aatattccatacaagacaatcctgctgtctactacagattccgcagactttgctgtagcg
gaatctctggagaagtatggtctggaaaaagagaatcccaaggactactgcattgcccgg
gttatgcttccccctggagctcagcattctgatgaaagaggtgctaaggaagttattctt
gatgatgacgagtgtcctttacaaatcttcagggaatggccaagtgacaaagggatttta
gtctttcaactgaagaggagaccaccggactatatcccaaagaaaatgaagaaacacgtt
gaagggaagccactgaaggggaaggacagagttgatgggtctggctatggttctgctctt
cctcctgagaaactgccctacttagtagagttaagccccgggagaaggaatcactttgcg
tactacagctatcacacctatgaagatggctctgactccagagacaagccaaagttatac
cgccttcaattaagtgtgactgaagttgggacagagaagtttgatgacaattctatccag
ttgtttggcccagggattcagccccatcactgtgatctcacgaacatggatggagtggtc
actgtgactcccagaagtatggatgcagagacctacgtggatggccagcgcatctcagag
actaccatgctgcagagtggcatgaaagtgcagtttggcacctcacacgtgtttaagttt
gtggaccccatccaggaccacgttctttcgaagagatctgtggatggaggcctgatggtc
aagggcccaagacataaacctggtagagctgttcaggagacaacctttgatttgggagga
gatattcacagtgggacagcattgccagcaagcaggagcacgactagactggacagtgac
aggatgtcctctgcctccagcactgctgagcgagggatggtgaaaccagtgatccgattg
gaccaggagcaggattatcgccgaagagaaagcagaacccaggatgcggttgggcctgag
ctgatcctgcctgccagcattgaattcagggaaagctcggaagattcttttttgtccgcc
attataaactataccaatagctctacagttcactttaagttgtcgccgacgtatgtgctg
tacatggcatgccggtatgtattgtccagccagcacaggcccgacatcagccctgcagaa
cgcacacataaggccatcgctgttgtcaacaagatggtgagcatgatggaaggggtcatc
caggaagtagaccaggttgatcagaaacaaaagaacattgccggggcacttgctttctgg
atggcaaatgcatctgaacttctcaacttcatcaagcaggaccgagaccttagtcggatc
acactagatgcccaggatgttttggcacacttggttcagatggcatttaagtacttggtt
cactgtcttcagtcagagcttaataactacatgccagcctttctggatgatcctgaggag
aacagtctgcaaagaccaaaaatagatgacgtgctgcatacactcaccggagccatgtcc
ttgctgaggcgctgcagggtcaatgctgccttgaccatccagctattctcccagctcttc
cattttatcaatatgtggctgttcaacagattggtgactgacccagattcaggcctgtgt
tctcactactggggagcaattatccgccagcagctagggcatattgaagcctgggcagag
aagcagggactagagctggcagctgattgtcacttgagcaggattgtgcaggctactact
ttgcttaccatggataagtatgtgcctgatgacattccaaatataaacagcacatgcttt
aagttaaattctctgcaacttcaagccttattacaaaattaccactgtgcacctgatgag
cctgttatccctacggatctcatagaaagtgttgtggctgttgctgagaacacagctgat
gagctcgcccgcagtgatggcagagatgttcagttggaggaggaccctgacctacagcta
ccttttcttttgccagaagatggatattcctgtgatgtcgtcagaaacattccaaatggt
ttacaagaatttttagaccctctttgccagagaggattttgcaggttgattcctcataca
cgttcaccaggtacttggacgatatattttgaaggtgcagattatgaaagtcaccttatg
cgtgagaacacagaactggcccagcctctgaggaaggaacctgaaataatcactgtgacc
ctaaaaaaacagaatggaatgggcctcagcattgtagcagcaaagggtgctggccaggat
aaactgggaatctacgttaagtctgttgtgaaaggaggcgctgcagatgtggatggacgt
ctagctgctggtgaccagctcctcagtgtggatggacgaagtctggttggactttctcag
gaaagggcagcagaactcatgacaagaaccagttctgtggtcacacttgaagttgcaaag
caaggcgccatctatcacggcctggccaccctccttaaccagccatcccccatgatgcag
agaatttcagatcgtcgtggctcaggtaaacccagaccaaagagtgaaggttttgagctc
tataataattcagctcaaaatggctccccagagagtcctcagctgccttggacagagtac
agtgagccaaagaaacttcctggtgacgacagactgatgaaaaacagagctgatcaccgt
tccagccccaatgtggcaaatcagcctcctagccctggagggaagagtccatatgcttct
ggaacagcagctaagataacatctgtctctactggaaacctctgcactgaggagcagact
cctccacctagacctgaagcctatcccatccctactcagacgtacaccagagagtatttt
acctttccagcttcaaaatcccaggatcggatggcccctcctcagaaccagtggccaaat
tatgaggaaaagccacatatgcacacagaaagtaatcattccagtattgcaatccagcgt
gttacccgttcccaggaagagcttcgagaagagaaggtttaccaacttgagcggcatcaa
gtagaggctggcttggatcgcaagtgtgacagtgatatgtggatcaatcagagctcctca
gtggactccagcacatccagccaagagcacctaaaccattcctccaagtcagtcacccct
gcttccactctgaccaaaagtggtcctggacgttggaaaactccagcagcagttctaccc
acccctgtcgctgtctcccagcccattcgaacagacctacctccaccaccccctccacct
cctgtccactacaccagtgattttgatggcatcccagtggatttgcccctcccacctcct
cctaccaaccaggtaggaccccagtctgctcaggtggctgctgcagagcggaaaaagaga
gaagaacatcagcggtggtatgagaaagagaaggcccgcctcgaggaggaacgagagaga
aagcgcagggagcaggagcggaagttggggcagatgcgcacacagtccctgaaccctgct
tccttctctcctttggccacactgaccaagccagaaaagccttccacattgcagaggccc
caagaaacagtcattcgggagctgcagccccagcaacagccccgcacgattgagcgcagg
gacctgcagtacatcaccatcagtaaagaagaactgtcttctggtgatagtctgtctcca
gacccctggaaacgagatgccagggagaagctggagaaacaacagcaaatgcacattgtg
gacatgctgagcaaggagatccatgagctgcagaacaaggtggaccgcactgcagaggag
agtgaccgcctgcggaagctcatgctggagtggcagttccagaagagactgcaggagtcc
aagcagaaggatgaggatgatgaggaagaggaggatgatgatgtggacaccatgctgatc
atgcagcgtctggaggctgagcgcagagccaggcagactgctatgccagcaatctctgtt
ctagatttgttgcaggatgaggaacgcaggcgccagcagcagttggaagaaatgcgcaaa
cgagaagcagaagatcgtgtgagacaagaggaagaccgccgccatcaggaggaggagcga
gtaaagagagacgctgaagaaaagaggcgacaggaagaagggtattacagccgcctagaa
gctgagaggcgcagacagcacgacgaggccgcacgcaggttgctggagcccgaagatcct
gggctgagccgacctccacttccacgggactatgagcccccatccctgtccccagcaccc
agcgcccctcctcccccacctcagcgaaatgcctcctacctcaaaacacaggtcctctcc
ccagattcgctgttcactgccaagtttgttgcctatgatgatgaggaggaggaggaggac
tgcggcccagcaggtcaggataagtaccccagcacaagaaagtctcatgagcaccttcct
cttgctgcccctaagccacagcagccacgcccagcctcggatggcatctttctctccaac
tcattccagccacccttggccaaagccaacagtactgctaacagagcaggcccgccccca
ccccctccaggcaaaccgagcttctaccggcctgtccactggaaaggaccgtactcttct
tacacaggatctgcaggaacaatcttgggagcccatgatgcttcccgggacccaagagag
aagcacacgagaagccaagaagcagactcacctggcagttctggagcccctgaaaacctg
acatttaaagagcgtcagcgcctcttttcacaagggcaagatgtgtctgacaaagtaaaa
gcttctcgtaaattaacagaacttgagaatgagctgaacaccaagtga
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integrated database retrieval system
