Chionomys nivalis (European snow vole): 130869609
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Entry
130869609 CDS
T11437
Symbol
Col4a4
Name
(RefSeq) collagen alpha-4(IV) chain
KO
K06237
collagen type IV alpha
Organism
cnl Chionomys nivalis (European snow vole)
Pathway
cnl04151
PI3K-Akt signaling pathway
cnl04382
Cornified envelope formation
cnl04510
Focal adhesion
cnl04512
ECM-receptor interaction
cnl04518
Integrin signaling
cnl04820
Cytoskeleton in muscle cells
cnl04926
Relaxin signaling pathway
cnl04933
AGE-RAGE signaling pathway in diabetic complications
cnl04974
Protein digestion and absorption
cnl05146
Amoebiasis
cnl05165
Human papillomavirus infection
cnl05200
Pathways in cancer
cnl05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
cnl00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
130869609 (Col4a4)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
130869609 (Col4a4)
04518 Integrin signaling
130869609 (Col4a4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
130869609 (Col4a4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
130869609 (Col4a4)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
130869609 (Col4a4)
09154 Digestive system
04974 Protein digestion and absorption
130869609 (Col4a4)
09158 Development and regeneration
04382 Cornified envelope formation
130869609 (Col4a4)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
130869609 (Col4a4)
09162 Cancer: specific types
05222 Small cell lung cancer
130869609 (Col4a4)
09172 Infectious disease: viral
05165 Human papillomavirus infection
130869609 (Col4a4)
09174 Infectious disease: parasitic
05146 Amoebiasis
130869609 (Col4a4)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
130869609 (Col4a4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cnl04147
]
130869609 (Col4a4)
00536 Glycosaminoglycan binding proteins [BR:
cnl00536
]
130869609 (Col4a4)
Exosome [BR:
cnl04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
130869609 (Col4a4)
Glycosaminoglycan binding proteins [BR:
cnl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
130869609 (Col4a4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
130869609
NCBI-ProteinID:
XP_057617882
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Position
2:114093125..114212473
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AA seq
1685 aa
AA seq
DB search
MRCFFRWTKPSVTGPWSLIFILFTVQYEYGSGKKYGSPCGGRNCSVCQCFPEKGSRGQPG
PLGPQGPIGPLGPPGPIGIPGEKGLRGVSGLPGAEGEKGDKGPTGVPGFPGLDGVPGHPG
PPGPRGKPGVDGFSGSRGDPGFPGERGAPGPGGPPGQPGENGEKGRSVFISGGIKGIQGD
RGDPGPPGLPGFRGAQGSAGPMGYAGAPGPAGPIGHPGSPGLKGNRAVGIKGQRGDPGEV
GQHGPPGPTLFVQPPDLNLYKGEKGIKGIPGTIGPPGPPGRKGEPGIGTKGEKGIPGFPG
PRGEPGSHGSPGFPGFKGEQGVAGDPGLSGFLGAKGDPGDRGDPGPPGALVTPPPPLKGP
TGDPGPPGRYGEIGDVGLPGPPGPPGRPGETCPGMVGPPGPPGIPGPPGFPGEAGVSKRF
DCAPGEPGKPGPSGLPGAPGPQGTPGSDVIYCSPGCPGPMGQKGKMGPPGRRGAKGEKGN
EGLCICPLGPMGPPGPPGLPGRQGSKGDLGLPGWNGEKGDPGQPGAEGPPGPQGMPGALG
SPGHKGAKGDMVTSRVKGQKGERGPDGPPGFPGSRGQDGQDGRAGERGDPGPRGDHKDAT
PGERGLPGLPGPRGTTGPVGPPGLGFPGPPGERGQPGEPGRPGMRGFDGMKGQRGDTISC
NVTYPGNPGPPGFDGPPGPKGFPGPPGTPGMRCPDGQKGQQGKPGRPGIPGPPGFRGDMG
DPGIGGENGTSPSGPPGPPGSPGVDGQKGIPGDPSFGDPGPPGDRGLPGVPGMKGSKGYP
GCPGFEGPPGNPGSPGLKGPKGRQGSPGFAGIPGPPGHSCERGAPGTPGQPGLPGAPGSP
GAPGWKGQSGDMGPSGPAGMKGLPGLPGLPGADGFRGPPGTPGPTGDDGPPGLIGPKGHP
GSPGYRGFPGERGRSGPDGQPGRKGEIGEKGWPGSQGDVGEKGAKGDRGPPGDVGETVII
SRKGEPGETGQPGDDGFPGPRGDKGSPGMQGGRGDSGRDGVPGLHRGLPGLNGPPGPPGP
PGPPGSPGLRGVIGFPGFPGDQGDPGSPGPPGFSGDDGARGPKGSKGDPASQRGPSGPKG
EPGSPGYQGHPGAPGEQGFPGGDGPRGPPGRLGQPGSSGPPGYPGAPGMPGLKGYPGETG
DLGPRGSAGDLGRPGPPGVKGPPGSPGLNGLHGLKGEKGAKGTSGLHERGPPGPMGIPGL
KGERGDPGSPGISPPGLSGEKGLPGPPGRPGPPGRIGAPGRPAKGDIPDPGPPGDWGPPG
PDGPRGAPGPPGSPGNVSLLKGDPGDCGLPGPPGSRGLPGPPGCEGAPGCDGKDGQKGPM
GFPGPPGPPGFPGAPGEKGLPGPPGRKGPIGPPGCRGEPGPPADLDSCPRIPGLPGVPGP
RGPEGAVGLPGERGPPGPGCKGEPGLDGRRGQDGFPGSPGPPGHKGDTGEAGCPGAPGPP
GSIGDPGPKGFGPGYLSGFLLVLHSQTDQEPACPMGMPRLWTGYSLLYMEGQEKAHNQDL
GLAGSCLPVFSTLPFAYCNIHQVCHYAQRNDRSYWLASGAPLPMMPLLEEEIRPYISRCA
VCEAPAQAVAVHSQDQSIPPCPRGWRSLWIGYSFLMHTGAGDQGGGQALVSPGSCLEDFR
AAPFLECQGRQGTCHFFANKYSFWLTTVSPEEQFSSSPSPDTLKDVQAQRQKISRCQVCL
RIQNS
NT seq
5058 nt
NT seq
+upstream
nt +downstream
nt
atgaggtgctttttcagatggaccaagccctcagtcacaggcccctggtcactaattttt
attctctttactgtacaatatgaatatgggagtggcaagaagtatggcagcccttgtgga
ggaagaaactgctctgtctgccagtgttttcctgaaaagggatctcggggtcaaccagga
ccactgggaccacagggaccaatagggcccttgggacccccgggacccattgggattcca
ggagagaaaggactgagaggtgtcagtggcttgcctggagcagaaggagagaaaggagac
aagggtccaaccggtgtccctggatttccaggtttggatggcgtaccaggtcacccagga
cctccaggacccagaggcaaacctggcgtggatggtttcagtggctcaagaggtgatcca
ggatttccaggagaaagaggagcgcctggcccaggaggcccccctggtcagcctggggaa
aatggagaaaaaggaagatcagtgttcatttccggtggcattaaaggtattcagggagac
cgcggggacccaggacctcccggcttgccaggatttaggggtgcccaaggatcagcaggg
cccatggggtatgctggtgcacccgggcctgcaggacctataggtcatcctgggagccct
gggttgaagggaaatcgtgctgtgggaataaaggggcaaaggggagacccgggtgaagtt
ggccagcatggtcctcctgggcccaccctgtttgtacagccacctgatctgaacctctat
aaaggagaaaagggtataaaaggaattcccggaacaattggacctccaggacctccagga
cgcaagggagagcctgggattggtaccaaaggagagaaaggtattcctgggttcccagga
ccccggggtgaacctggttcccatggatctccaggttttccaggattcaagggagaacaa
ggagtggctggagatcctggactgtctggctttcttggtgcaaagggggatcctggagat
cgcggggacccaggaccaccgggtgctttggtaactccccctcctccactgaaaggtcct
acaggggacccagggccccctggccgttatggagaaattggagatgttggactaccaggt
cctcccgggccgccaggcagaccaggagaaacttgtccaggcatggtgggaccccctggg
ccaccagggattcctggtcctccaggatttccaggggaagctggtgtttctaaaagattc
gactgtgctccaggagaaccagggaagccagggccatctggtcttcctggagcgccagga
ccacagggcacccctggatcagatgttatatattgcagccctgggtgtcctggaccaatg
ggacaaaagggaaaaatgggtcccccaggaagaagaggagccaaaggagaaaaaggaaat
gagggactctgtatctgtccacttggtcccatgggaccccctggccctccaggacttcct
ggaagacaaggaagtaaaggagacttagggcttcctggctggaatggagaaaagggtgat
ccaggccagcctggtgctgaaggacctccagggccccaaggaatgcctggtgccttggga
tctcctggccacaaaggggcaaagggtgacatggtcacatcaagagtgaaaggacagaaa
ggagaaagagggcctgatgggccaccaggatttccagggtcacgtggacaagatggtcag
gatggccgtgctggagaaagaggggatccggggcccagaggtgaccataaggatgcgacc
cctggtgagagagggcttcctggactgccaggtcctcgagggacaacaggacctgtggga
cctccaggactgggatttccaggcccaccaggagagagaggccagccaggagagccgggg
cgtccaggcatgaggggttttgatggcatgaaggggcagagaggtgacaccatttcttgc
aatgtaacctatccagggaatccaggccctccaggttttgatggacctccaggtccaaag
gggtttccaggtccccctggaactccaggtatgagatgtccagacgggcagaaaggccag
caaggcaaaccaggaaggcctggaattccaggtccccctggttttcgtggtgacatggga
gatccaggcattggaggtgaaaacgggacctcccctagtggacccccaggtccacctggg
tcccctggagtggatggccagaaaggaatcccaggagacccttcgtttggtgacccagga
ccccctggagataggggtcttccaggagtgccaggcatgaaaggaagcaaaggttaccca
ggatgcccagggtttgaagggccacctggcaatcccggatctccaggtctcaaaggtccc
aaaggcagacagggaagtcctgggtttgcagggatcccaggaccccccggtcattcctgt
gaaagaggtgctccagggaccccaggacaaccaggacttcctggagctcctggtagtcca
ggggccccaggttggaaaggccagtcaggagacatggggccttctggaccagctgggatg
aagggcctccctggcctcccaggcctcccaggagcagatggttttcgagggcctcctggg
actccaggccccactggagacgatggcccacctggcctcataggcccaaagggacaccca
gggtcgcctggctaccgtggttttccaggagagagaggaaggtcaggcccagatggacaa
cctggaagaaagggagaaattggagagaagggctggcctggctcccagggagatgtggga
gagaaaggtgccaaaggagacagaggacctcccggtgatgtaggagaaacagtcatcatt
tccagaaagggggaacctggggaaactgggcagccaggagatgatgggttcccaggaccg
agaggtgataaaggaagcccagggatgcaagggggaagaggagattccggaagagacgga
gtacctggattacacagaggactgcctggattaaatgggcctcctgggcctcccggcccc
cctggccctccgggctcacctggattaaggggagtcattggctttccaggatttccaggt
gatcagggtgatccaggttctccaggtccccctggattctcaggagatgatggagcaaga
ggacctaaaggaagcaaaggcgaccctgccagtcagcgtggtccatctggtccgaagggt
gagccaggtagtcctggataccaaggacatcctggggcccctggagagcaaggctttcct
ggaggtgatgggcctagaggaccaccaggcagacttggacaacctggctcttctggacca
ccaggatatccaggtgccccagggatgcctgggctgaagggctacccaggagaaacggga
gaccttgggccaagaggttccgcgggagatttagggaggccaggtcctccaggagtaaaa
gggcctcccgggtctcctggtctgaacggcttgcacggtctcaagggtgagaaaggagcc
aaaggtacctcaggtctgcatgaaaggggtccacctgggcccatgggaatacctgggcta
aagggagagagaggtgatcctgggagtccaggaatttctcccccaggcctttctggagaa
aaaggcctcccaggacccccagggagaccaggaccacctggtcgcataggtgctccagga
agacctgctaaaggtgacattcctgatccaggtccacctggagactggggacctcccggc
cctgatggcccaagaggagcacctgggcctccaggctcccccgggaatgtcagccttctg
aaaggggatccaggtgactgtggtttgcctggaccacctggttcccgaggcctaccaggc
cctccagggtgtgagggtgccccaggatgtgatggcaaagatggtcagaaaggaccaatg
ggattcccagggcctccagggccacctggttttcctggggcacctggagagaagggacta
cctggccctccaggaagaaaagggcccataggtcctccaggctgcagaggtgaaccgggg
ccccctgccgacctggattcctgtcctcggatcccaggacttcctggagtgccaggcccc
agaggaccagagggagctgtggggctccctggagagagaggcccccctggaccagggtgc
aaaggagagcctgggctggatggtaggaggggccaggatggcttccctggatctcctggg
cccccaggacacaaaggcgacactggagaggctggctgccctggagcaccaggccctcct
ggttcgattggtgatcctggacccaaggggtttggccctggatacctcagtggctttctc
cttgttctccacagtcagacagatcaagaacccgcctgccctatgggtatgccccggctt
tggaccgggtacagcctgttatacatggaaggacaggagaaggcacacaatcaagatctc
ggtttggcagggtcttgtcttcccgtgtttagtacactaccctttgcctactgcaacatt
caccaagtgtgccactatgcccagagaaatgacaggtcctactggttggccagtggggct
cctcttcccatgatgccactcttggaggaagagatccgcccttacatcagccgctgcgcc
gtgtgtgaggccccagcccaggcagtggccgtccacagtcaggaccaatccattccaccg
tgtccacgggggtggaggagcctctggattggatactcattcttgatgcacactggagct
ggggaccaaggaggagggcaggcccttgtgtcacctggcagctgcctagaagacttcaga
gctgcaccattccttgaatgccagggccgacagggaacctgtcacttttttgccaataaa
tacagcttctggctgaccacggtgagcccagaagagcagttttcctctagcccgtcaccg
gacaccttgaaagacgttcaggcccagcgccagaaaatcagccggtgccaggtctgcctg
cgaattcaaaacagctag
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