Chionomys nivalis (European snow vole): 130871150
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Entry
130871150 CDS
T11437
Symbol
Xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
cnl Chionomys nivalis (European snow vole)
Pathway
cnl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cnl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130871150 (Xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cnl03019
]
130871150 (Xab2)
03041 Spliceosome [BR:
cnl03041
]
130871150 (Xab2)
Messenger RNA biogenesis [BR:
cnl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
130871150 (Xab2)
Spliceosome [BR:
cnl03041
]
Complex B
Other components
Prp19-related factors
130871150 (Xab2)
Complex C
130871150 (Xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
TPR_14
HAT_PRP39_N
TPR_12
TPR_2
TPR_8
Suf
TPR_19
TPR_15
ARM_TT21
ARM_TT21_C
TPR_1
TPR_21
TPR_16
TPR_NPHP3
Motif
Other DBs
NCBI-GeneID:
130871150
NCBI-ProteinID:
XP_057620412
LinkDB
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Position
3:80084050..80094624
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AA seq
855 aa
AA seq
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MVVMARVPRPERPDLVFEEEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERA
LKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFL
MDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESA
EEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNV
DAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAVRTVMTVRDFTQVFDSYA
QFEESMIAAKMETSSELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEW
HKRVALHQGRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEK
ATKVNFKQVDDLASVWCQCGELELRHENYDEALKLLRKATALPARRAEYFDGSEPVQNRV
YKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKA
YERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYA
QLEEEWGLARHAMAVYDRATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEVLS
DEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTI
REMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGMDDMKLLEQRAEQLA
AEAERDQPPRAQSKIFFVRSDASREELAELAQQANPEEIQLGEEEDEDEMDLEPNEVRLE
QQSVPAAVFGSLKED
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atggtggtgatggcgcgggttccgcgtcccgagcggccggatcttgtttttgaggaggag
gaccttccctatgaggaagaaatcatgaggaatcagttctccgtcaaatgctggctccgc
tacatcgagttcaaacagggggcccccaaaccccggctcaatcagttgtacgagcgggca
ctcaaactgcttccctgcagctacaaactctggtaccgctatctgaaggcacgccgggca
caagtgaagcatcgctgcgtgactgatcctgcctatgaagatgtcaacaactgccatgag
agggcctttgtgttcatgcacaagatgccacgtctgtggctagactactgccagttcctc
atggaccagggacgagtaacacacacccgccgcacctttgatcgtgccctccgggcccta
cccatcacacagcactctcgcatctggcccctgtacctccgcttcctacgctcccaccca
ctgcctgagactgctgtgagaggctaccgtcgcttcctcaagctcagtcctgagagtgct
gaggagtacatcgagtacctgaaatccagtgaccggctggatgaggctgcacaacgcctg
gccaccgtggtgaacgacgagcgctttgtgtccaaggccggcaagtccaactaccagctg
tggcatgagctctgcgaccttatctcccagaacccggacaaggtacagtccctcaatgta
gatgccataatccgtggtggactcacccgcttcaccgaccagttgggcaagctgtggtgc
tcgctggctgactactacatccgcagtggccacttcgagaaggctcgggacgtgtatgag
gaggctgtccgcactgtgatgactgtgcgggacttcacccaggtgttcgacagctatgcc
cagtttgaggagagcatgattgcagcaaagatggagacttcttctgaactggggcgtgag
gaggaggatgacgtggacctggagttgcgcctggcccgcttcgagcagctcattagccgg
cggcccctactcctcaacagtgtcctgctgcgccagaacccacaccatgtccatgagtgg
cacaagcgtgtggccctgcatcagggccgcccccgtgagattatcaacacatacacagag
gctgtgcagacagtggaccctttcaaggccacaggcaagccccacacgctgtgggttgca
tttgccaagttttatgaagataatggacagctagatgatgcccgtgtcatcctagagaag
gccaccaaggtaaacttcaagcaagtggatgacttggcaagcgtgtggtgccagtgtggg
gagctggagctccggcatgagaattatgatgaggccttgaagctgttgcggaaagctaca
gcgttgcctgcccgcagggctgagtactttgatggttcagagccagtgcagaaccgtgta
tacaagtcgctgaaggtgtggtccatgcttgccgacttggaggaaagtctgggcaccttc
cagtcaaccaaagctgtatatgaccgaatcctggatctgcgcatagccacaccgcagatc
gtcatcaactatgccatgttcctggaggagcacaagtactttgaggagagctttaaggca
tacgagcgtggcatatcactgttcaaatggcccaacgtgtcagacatctggagtacctac
ctgaccaaattcattgcccgctacgggggccgcaagctggaacgcgcacgggacctcttc
gagcaggcactagatggctgcccgcccaaatatgccaagacgctatacctgctctatgca
cagctggaggaggagtggggccttgcccgtcatgccatggctgtgtatgatcgcgctacc
agggcagtggagccagcccagcagtatgatatgttcaacatctacatcaagcgggctgct
gagatctatggtgtcacccacactcgtggcatctaccagaaggccattgaggtgctgtct
gacgagcatgcccgggagatgtgcctgcggtttgcagacatggagtgcaaacttggtgaa
attgaccgtgcccgggccatctacagtttctgctcccagatctgtgatcccaggacaact
ggggcattctggcaaacatggaaggactttgaggttcggcacggcaatgaggacaccatc
agggagatgctgaggatacgtcggagtgtgcaggccacatacaatactcaggtcaacttc
atggcctcacagatgctcaaggtgtccggcagtgccacaggcaccgtgtctgacctggct
cctgggcagagcggcatggatgacatgaagttgctagaacagcgggcagagcagctagca
gctgaggcagagcgggaccagccccctagggcccagagcaagatcttctttgtaaggagt
gatgcatccagggaggagctggcagagctggctcagcaggccaatcccgaggagatccag
ctgggcgaggaagaggacgaggatgagatggatctggagcccaatgaagtccgactggaa
cagcagagcgtgccagctgctgtatttgggagcctgaaggaagactga
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