Chionomys nivalis (European snow vole): 130872634
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Entry
130872634 CDS
T11437
Symbol
Smarca4
Name
(RefSeq) transcription activator BRG1 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
cnl Chionomys nivalis (European snow vole)
Pathway
cnl03082
ATP-dependent chromatin remodeling
cnl04714
Thermogenesis
cnl05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
cnl00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
130872634 (Smarca4)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
130872634 (Smarca4)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
130872634 (Smarca4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cnl03021
]
130872634 (Smarca4)
03036 Chromosome and associated proteins [BR:
cnl03036
]
130872634 (Smarca4)
Transcription machinery [BR:
cnl03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
130872634 (Smarca4)
Chromosome and associated proteins [BR:
cnl03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
130872634 (Smarca4)
Chromatin remodeling factors
BAF complex
130872634 (Smarca4)
PBAF complex
130872634 (Smarca4)
GBAF(ncBAF) complex
130872634 (Smarca4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
Htt_C-HEAT
DUF2009
Motif
Other DBs
NCBI-GeneID:
130872634
NCBI-ProteinID:
XP_057622784
LinkDB
All DBs
Position
4:21112016..21214708
Genome browser
AA seq
1650 aa
AA seq
DB search
MSTPDPPLGGTPRPGPSPGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPMPTQG
PGGYPQDNMHQMHKPMETMHEKGMPDDPRYNQMKGMGMRSGAHTGMGPPPSPMDQHSQGY
PSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGSDPQALGQQNRGPTPFNQNQLHQL
RAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPSSVSATGPGPGSGPGPGP
GPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQ
KLIPPQPTGRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPLVPLHQKQSRITPIQKPRG
LDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEV
VVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYLNSIL
QHAKDFREYHRSVTGKLQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRK
LIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKVENAEGQTPAIG
PDGEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMNPGYEVAPRSDSEES
GSEEEEEEEEEEQPQPAQPPTLPVEEKKKIPDPDSDDVSEVDARHIIENAKQDVDDEYGV
SQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADE
MGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVAKVSYKGSPAA
RRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTH
YVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEE
TILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTD
GSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASG
KFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLK
TFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVR
VLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDESR
HCSTGSGSASFAHTAPPPAGVNPDLEEPPLKEEDEVPDDETVNQMIARHEEEFDLFMRMD
LDRRREEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYS
DSLTEKQWLKTLKAIEEGTLEEIEEEVRQKKSSRKRKRDSEAGSSTPTTSTRSRDKDEES
KKQKKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEY
YELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVF
TSVRQKIEKEDDSEGEESEEEEEGEEEGSESESRSVKVKIKLGRKEKAQDRLKGGRRRPS
RGSRAKPVVSDDDSEEEQEEDRSGSGSEED
NT seq
4953 nt
NT seq
+upstream
nt +downstream
nt
atgtccactccagacccgcccctgggtggaactcctcggcctggcccttccccaggccct
ggcccctcacctggtgcaatgctgggccctagccctggcccttcaccaggctctgcccac
agtatgatggggcctagcccaggacctccttcagcaggacatcccatgcctacccagggg
cctggaggataccctcaggacaacatgcaccagatgcacaagcctatggagacgatgcat
gagaagggcatgcctgatgacccacgatacaaccagatgaaagggatgggcatgcggtca
ggggcccacacaggtatgggacccccacctagtcccatggaccagcattcccaaggttac
ccttcacccctgggtggctctgaacatgcctccagtcccgtcccagccagtggcccatct
tcaggccctcagatgtcctctgggccaggaggggccccattagatggttctgacccccag
gccttggggcagcaaaaccgaggcccaaccccatttaaccagaaccagctacatcaactc
agagctcagataatggcttacaagatgttggccaggggccagccattgcctgaccacctg
cagatggccgtgcaaggcaagcggccaatgcctggaatgcagcagcagatgccaacacta
cctccatcctcagtgtctgctacaggacctgggcctggatctggccctggccctgggcct
ggtccaggaccagcccctccaaattacagtagaccccatggtatgggagggcccaacatg
cctcctccaggaccctcaggtgtgccccctgggatgcctggtcagccccctggaggacct
cccaagccatggcctgaaggacccatggccaatgctgctgcccccacaagcaccccacag
aagctgattcccccccaaccaacaggccgcccttcacctgcacctcctgctgtcccacct
gctgcctcacctgtgatgccaccacaaacacagtccccagggcagccggcccagcctgct
ccattggtgcccctgcaccagaagcagagccgcatcacccctatccagaagccccggggc
ctggaccctgtggagatcctacaggagcgggagtacaggctgcaggctcgaatcgcacac
cgaattcaggaacttgaaaatcttcctgggtccctggctggggacctgcgaaccaaagca
accattgaactcaaggcccttaggttgctgaattttcagaggcagctgcgccaggaggtg
gtggtgtgcatgcgcagagatacagctttagagacagccctcaatgccaaggcctacaag
cgcagcaaacgacagtcactgcgggaggcccgcatcactgagaagctggagaagcagcag
aagattgaacaggagcgaaagcgccgccagaaacaccaggagtacctcaacagcatcctg
cagcatgcaaaggacttcagggagtatcacagatcagtcacaggcaaactccagaaactc
accaaggctgtggccacctatcatgcaaatactgagcgggagcagaagaaggaaaatgag
cgcattgagaaggagcgaatgcggagacttatggctgaagatgaggagggctaccggaag
ctcattgaccagaagaaggacaaacgcctggcctacctcctgcagcagacagacgaatat
gtggccaacctcacagagttggtgcggcagcacaaagccgcccaggttgccaaagagaag
aagaagaaaaagaaaaagaagaaggtggaaaacgctgaaggacagacacctgctattgga
ccagatggcgagcctctggatgagaccagccagatgagcgacctccctgtgaaggtgatc
catgtagagagcggcaagatcctcacaggcacagatgccccaaaagccgggcagctagaa
gcctggcttgagatgaacccagggtatgaagtcgctcccaggtcagatagtgaagaaagt
ggctctgaagaggaggaggaggaggaggaggaagagcagcctcaacccgcacagccccct
acactgcctgtggaggagaagaagaagattccagacccagacagtgatgacgtctctgag
gtggatgcgcgacacattattgagaatgccaagcaagatgtggatgatgagtacggtgtg
tcccaggcccttgctcgtggtctgcagtcctactatgctgtggcccatgctgtcacagag
agagtggacaagcagtcagccctcatggtcaacggtgtcctcaaacagtaccagatcaag
ggcttagagtggctggtgtccctctataacaacaacctgaatggcatcctggctgatgag
atggggctgggaaagaccatccaaaccatcgcgctcatcacatacctcatggagcacaag
cgcatcaacgggcccttcctcatcattgtgcctctctcgacgctgtcaaactgggcatat
gaatttgacaagtgggccccctcagtggcaaaggtttcctacaagggctctccagcggca
agacgagctttcgtcccacagctacgtagtggaaagttcaatgtcttattgaccacctat
gagtatatcatcaaagacaaacatatcctggccaagatccgctggaagtacatgattgtg
gatgaaggccaccgcatgaagaaccaccactgcaagctgacacaggtcctcaacacacac
tatgtggcccctcggcgcctgcttcttacgggcacaccattgcagaacaagctacccgag
ctctgggcactgcttaacttcctgctgcccactatcttcaagagctgcagcaccttcgaa
cagtggttcaatgcaccctttgccatgacaggagagaaggtggacctgaatgaagaggag
accatcctcattatccgtcgcctgcacaaggtgcttcggcccttcctcctgcggcggctc
aagaaggaagttgaagcccagctacctgaaaaggtggaatatgtcatcaaatgtgatatg
tcagccctacaacgtgtgctctaccgtcacatgcaggccaaaggtgtgctgttgactgac
ggctctgagaaggacaaaaagggcaaaggtggcaccaagacactgatgaacactatcatg
cagcttcgcaagatctgcaaccacccctacatgttccagcatatcgaggaatccttttct
gaacacttggggttcaccggcggcatcgtgcaaggattggacctgtaccgtgcctcaggg
aaatttgaacttcttgatagaattctacccaaactccgtgcaaccaaccataaagtgcta
ctcttctgccaaatgacctccctcatgaccatcatggaagactactttgcataccgtggc
ttcaaatacctcaggcttgatggaaccacaaaagcagaggaccggggcatgctgctgaaa
acctttaatgagcctggctctgagtacttcattttcctgctcagtactcgtgccgggggg
ctgggcctcaatctgcagtcagctgacactgtgatcatctttgacagtgactggaatccc
caccaggacctgcaagcacaggatcgtgcccatcgaattgggcagcagaatgaggtgcgt
gtgctccgtctgtgcaccgtgaatagtgtggaggagaagatcctggccgctgccaaatac
aaactgaatgtggaccagaaggttatccaggcaggcatgtttgaccagaagtcatccagc
catgagcggcgcgccttcctgcaggccatcctggagcatgaggagcaggatgagagcaga
cactgcagcacgggcagcggcagtgccagcttcgcccacactgcccctccgccagcgggc
gtcaaccccgacttggaggagccacctctaaaggaggaagatgaggtacctgatgatgag
accgtcaaccagatgattgcccggcatgaagaagagtttgacctcttcatgcgcatggac
ttggaccgccggcgtgaagaggcccgcaaccccaagcggaagccacgcctgatggaagag
gatgagcttccatcttggatcatcaaggatgatgctgaggtagaacggctcacatgtgag
gaggaagaggagaagatgtttggccgtggttcccgccaccgcaaggaggtggactacagt
gactcactgacagagaagcagtggctcaagaccctgaaggccatcgaggagggcacgctg
gaggagatcgaagaggaggtccggcagaagaaatcctcacgcaagcgcaagcgggacagc
gaggccggctcctccaccccgaccaccagcacccgcagccgtgacaaagatgaggaaagc
aagaagcagaagaagcgtggacggcctcctgccgagaaactgtccccaaaccctcctaac
cttaccaagaagatgaagaagattgtggatgccgtgatcaagtacaaggacagcagtagt
ggaagacagctcagcgaggtattcatccagcttccctcacgcaaggagcttcctgagtac
tatgagctcatccgaaaacccgtggacttcaagaagatcaaggaacgcatccgcaaccac
aagtatcgcagcctcaatgacctggagaaggatgtgatgctgctgtgccagaatgctcag
acgttcaacctcgagggttccttgatctacgaggactccattgtcctgcagtctgtcttc
accagtgtgcggcagaaaattgagaaggaggatgacagtgaaggcgaagaaagtgaggag
gaagaggagggcgaggaggaaggctccgagtctgagtcccgctctgtcaaggtaaagatc
aaactgggccggaaggagaaagcccaggatcgactgaaggggggccggcggcggccaagc
cgggggtcccgggccaagcccgttgtgagcgacgacgacagtgaagaggaacaggaagag
gaccgctcaggaagtggcagcgaggaggactga
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integrated database retrieval system
