Chionomys nivalis (European snow vole): 130873387
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Entry
130873387 CDS
T11437
Symbol
Pdzrn3
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
cnl Chionomys nivalis (European snow vole)
Brite
KEGG Orthology (KO) [BR:
cnl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cnl04121
]
130873387 (Pdzrn3)
Enzymes [BR:
cnl01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
130873387 (Pdzrn3)
Ubiquitin system [BR:
cnl04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
130873387 (Pdzrn3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-RING_UBOX
Sina_ZnF
zf-C3HC4_3
zf-TRAF
zf-C3HC4_4
zf-RING_5
TRAF3_RING
Prok-RING_4
PDZ_Tricorn
zf-rbx1
RING_XB3-XBAT31
Motif
Other DBs
NCBI-GeneID:
130873387
NCBI-ProteinID:
XP_057624182
LinkDB
All DBs
Position
1:49337176..49565947
Genome browser
AA seq
1063 aa
AA seq
DB search
MGFELDRFDGDVDPDLKCALCHKVLEDPLTTPCGHVFCAGCVLPWVVQEGSCPARCRGRL
SAKELNHVLPLKRLILKLDIKCAHAARGCGRVVKLQELPEHLERCDFAPARCRHAGCGQL
LLRRDVEAHMRDACDARPVGRCQEGCGLPLTHGEQRAGGHCCARALRAHNGALQARLGAL
HKALKKEALRAGKREKSLVAQLAAAQLELQMTALRYQKKFTEYSARLDSLSRCVAAPPAG
KGEETKSLTLVLHRDSGSLGFNIIGGRPCVDNQDGPSSEGIFVSKIVDSGPAAKEGGLQI
HDRIIEVNGKDLSRATHDQAVEAFKTAKEPIVVQVLRRTPRTKMFTPASESQLVDTGTQT
DITFEHIMALTKMSSPSPPVLDPYLLPEEHPSSHEYYDPNDYMGDIHQDMDREELELEEV
GLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQN
REEAVALLTSEENKNFSLLIARPELQLDEGWMDDDRNDFLDDLHMDMLEEQHHQAMQFTA
SVLQQKKHEEDGGTTDTATILSNQHEKDSGVGRTDESTRNDESSEQENNGEDATASSNPL
AGQRKLTCSQDTLGSGDLPFSNESFISADCTDVDYLGIPVDECERFRELLELKCQVQSSS
PYSLYYPSSPLDTAGKSDPESVDKELELLNEELRSIELECLSIVRAHKMQQLKEQYRESW
MLHHSGFRNYNTSVDVRRHELSDITELPEKSDKDSSSAYNTGESCRSTPLTLEISPDNSL
RRMAEGSSEGATANIEAYRPSPKNLLAITEDPEVSTPNYSPSSKEVDPSQALESKERRVS
DGSRSPTASPKLGSAYLPSYHHSPYKHAHIPAHAQHYQSYMHLIQQKSAVEYAQSQMSLV
SMCKDLNSSNSSEPRMEWKVKIRSDGTRYITKRPVRDRLLRERALKIREERSGLTTDDDA
MSEMKMGRYWSKEERKQHLVKAKEQRRRREFMIQSRLDCLKEQQAADDRKEMNILELSHK
KMMKKRNKKIFDNWMTIQELLTHGTKSPDGTRVYNSFLSVTTV
NT seq
3192 nt
NT seq
+upstream
nt +downstream
nt
atgggtttcgagttggaccgcttcgatggcgacgtggaccccgatctgaagtgcgcgctg
tgtcacaaggtcctggaggacccgctgaccaccccgtgcggccacgtattctgtgccggc
tgcgttctgccctgggtagtgcaggagggcagctgcccggcgcgttgtcgcggtcgcctg
tcggccaaggagctcaaccacgtcctgccgcttaagcgcctcatcctgaagttggacatc
aagtgcgcgcacgcggcgcggggctgcggccgggtggtcaagttgcaggagctgcccgag
cacctggagcgctgcgacttcgcgcccgcgcgctgccgccacgcgggctgcggccagctg
ctgctgcgacgcgacgtggaggcccacatgcgcgacgcgtgcgacgcgcggcccgtgggc
cgctgccaggagggctgcgggctgccgctgacgcacggcgagcagcgcgcgggcggccac
tgctgcgcgcgggctctgcgggctcacaacggcgcgctgcaggcccgcctgggcgcgctg
cacaaggcgctcaagaaggaggcgctgcgggccggcaagcgcgagaagtcgctggtggcg
cagctggccgcggcgcagctcgaactgcagatgaccgcgctgcgctaccagaagaagttc
accgagtacagcgcgcgcctcgactcgctcagccgttgcgtggccgcgccgcccgcaggc
aagggtgaagaaaccaaaagcctgactcttgttcttcaccgggactctggctccctggga
ttcaatattattggcggccggccatgtgtggacaatcaagatggaccctccagtgaagga
atctttgtatccaaaatagttgacagtgggccggcagccaaggaaggaggcctgcaaatt
catgacaggattattgaggtcaacggcaaagacttatcccgagcaactcatgaccaggcc
gtggaagctttcaagacagccaaggagcccatcgtggtacaggtgttgagaaggacacct
cgaaccaaaatgttcacgcctgcctcagagtcgcagctggtagacacaggcacccaaact
gacattaccttcgagcacatcatggccctgacaaagatgtcttctcccagcccacctgta
ctggatccctacctgctgcctgaagagcacccctcatcccatgaatactatgatccgaat
gactacatgggggacatccatcaggacatggacagggaagagctggagctagaggaagtg
ggcctctacaggatgaacagccaggacaagctgggcctcaccgtatgctaccggacggat
gatgaagatgacattgggatttatataagtgagattgaccccaacagcattgcagccaag
gatggccgcatccgtgaaggagaccgcatcatccagattaatgggatagaagtacagaac
cgtgaagaggctgtggctctcctaaccagtgaagaaaacaagaacttctcgttgctgatt
gcaaggcctgaactccagctggacgagggctggatggatgacgacaggaacgactttctg
gatgacttgcacatggacatgcttgaggagcagcatcaccaggcaatgcagttcacagcc
agtgtgctccagcagaagaagcatgaggaagatggtggaaccacagacacagccaccatc
ttatccaaccagcacgagaaagacagcggtgtggggcggacagatgagagcacccgcaac
gatgagagctcagaacaggagaacaacggtgaagacgccacggcgtcctccaacccgctg
gcgggccagaggaagctgacctgtagccaggacaccctaggcagtggcgacctgcctttc
agcaatgaatcgttcatctctgcagattgtaccgatgtggactacctgggcatcccagta
gatgagtgtgagcgttttcgcgagctgctggagctcaagtgtcaggtgcagagcagcagt
ccctacagcctgtactaccccagcagcccactggacactgctggcaagagcgaccctgaa
agtgtggacaaggagctggagctactcaacgaggagctgcgcagcatcgagctggagtgc
ctgagcatcgtgcgtgcgcacaagatgcagcagcttaaggaacagtaccgcgagtcctgg
atgctgcaccacagtggcttccgcaactacaacaccagcgtggatgtgcgccgccatgag
ctgtcggacatcaccgagctgcccgagaagtcagacaaggatagctcgagcgcctacaac
actggggagagctgccgcagtaccccactcaccctggagatctccccagacaactccctg
cgaaggatggccgagggaagtagcgaaggggccacggccaacatcgaagcctacaggccg
tcccccaagaatctgctggccatcactgaggatcctgaagtaagcaccccaaactacagc
cccagctccaaagaggtggaccccagccaggccttggagagcaaagagcgccgagttagc
gatggcagcaggagccccactgccagcccaaaactgggcagtgcctacctgccctcatac
caccactccccatacaagcacgcccacatcccagcgcatgcccagcactaccagagctac
atgcacctgatccagcagaagtcggcagtggagtatgcgcaaagccagatgagcctggtg
agcatgtgcaaggacttgaactcctctaactcgtcggaacccaggatggagtggaaagtg
aagatccgcagcgacgggacgcgctacatcaccaaaaggccggtgcgtgaccggctactg
cgggagcgtgcacttaagatccgcgaggaacgcagcggcctgaccacagatgatgacgcc
atgagtgagatgaagatggggcgctactggagcaaggaagagcgcaaacagcatctggtg
aaggccaaggagcagaggcggaggcgcgagtttatgatacagagcaggctggattgtctg
aaggagcagcaggcggctgacgacaggaaggagatgaacatcctggaactgagccacaaa
aagatgatgaagaagaggaacaaaaagatctttgacaattggatgaccatccaagaactc
ttaacccatggcacaaaatcgccagacggcactagggtatacaattccttcctgtcggtg
actactgtttaa
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integrated database retrieval system
