Chionomys nivalis (European snow vole): 130874328
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Entry
130874328 CDS
T11437
Symbol
Smg7
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7 isoform X1
KO
K14409
protein SMG7
Organism
cnl Chionomys nivalis (European snow vole)
Pathway
cnl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cnl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
130874328 (Smg7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cnl03019
]
130874328 (Smg7)
Messenger RNA biogenesis [BR:
cnl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
130874328 (Smg7)
mRNA cycle factors
Common to processing body (P body) and stress granule
130874328 (Smg7)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
TPR_2
Motif
Other DBs
NCBI-GeneID:
130874328
NCBI-ProteinID:
XP_057625498
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All DBs
Position
5:67953415..68016260
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AA seq
1165 aa
AA seq
DB search
MLLQIVIVGENVSFKSQMRTENLKSEEHLKSSNIRQAEVLKAEMTDSKLGPAEVWTSRQA
LQDLYQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFL
EAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCL
VHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV
KFPFPAASTNLQKALSKALESRDELKTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREK
LEEQFKKLLFQKAFNSQQLVHVTVINLFQLHHLRDFSNETEQHSYSQDEQLCWTQLLALF
MSFLGILCKCPLQNDSQESYNAYPLPAVKVSMDWLRLRPRIFEEAVVDERQYIWPWLISL
LNSFHPHEDDLSSTNATPLPEEFELQGFLALRPSFRNLDFSKGHQGITGDKEGQQRRIRQ
QRLISIGKWIADNQPRLIQCENEVGKLLFITEIPELILEDPSETKENLILQETSVIESLA
TDGSPGLKSVLSTGRNPSNNCDPGEKPVVTFKENVKPREVNRDQGRSFPPKEVKSQAELR
KTPVSEARKTPVTQTPSQANNSQFIPIHHPGAFPPLPSRPGFPPPTYVIPPPVAFSMGSG
YTFPAGVSVPGTFLQSTAHSPAGNQVQAGKQSHIPYSQQRPSGPGPMNQGPQQSQPPSQT
PLTSLPAQPTAQSTSQLQVQALAQQQQSPTKVIPALGKSPPHHSGFQQYQQADASKQLWN
PPQVQGPLGKIMPVKQPYYLQTQDPIKLFEPSLQPPVIQQQPLEKKMKPFPMEPYNHNPS
EVKVPEFYWDSSYSMADNRAVMAQQPNMDRRSKRSPGVFRPEQDPVPRMPFEDPKSSPLL
PPDLLKSLAALEEEEELIFSNPPDLYPALLGPLASLPGRSLFKSLLEKPSELMSHSSSFL
SLTGFSVNQERYPNSSVFNEVYGKNLTTSSKAELNPSVASQETSLYSLFEGTPWSPSLPA
SSDHSTPASQSPHSSNPSSLPSSPPTHNHNSAPFSNFGPIGTPDNRDRRPADRWKTDKPA
MGGFGVDYLSATSSSESSWHQASTPSGTWTGHGPSMEDSSAVLMENLKSIWSSSMMHPGP
SALEQLLMQQKQKQQRGQGAMNPPH
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgctcttgcagatagtcattgtgggagaaaacgtttcatttaagtcccagatgaggacc
gaaaacttgaaatcagaggagcatctgaaatcaagtaatattaggcaggcagaagtcctg
aaggctgaaatgacagattctaagctgggtccagctgaggtctggacatccaggcaagct
ctgcaggacttgtaccagaaaatgctagttactgatctggaatatgctttagacaagaaa
gtagaacaggatctctggaatcatgcctttaagaatcagatcacaacactacaaggccaa
gcaaagaatcgagcaaacccaaatcggagtgaagttcaggcaaacctttctctgttccta
gaggcagctagtggcttctatactcagttattacaggaactgtgtacggtgtttaatgta
gatttgccatgccgtgtgaagtcttcccaattgggaattattagcaataaacagacgcac
accagcgccatagtgaagccacagtccagttcctgttcctacatttgccagcactgcctc
gtccaccttggagacattgctcgatacagaaaccagaccagccaggcagagtcctactat
aggcatgcagctcagcttgtcccctccaatggtcagccttacaatcagttggctatctta
gcttcttccaaaggagatcacctgaccacaattttctactactgcagaagcattgctgtg
aaattccctttcccagctgcctccaccaatctacagaaagcactttctaaagcactggaa
agccgggatgagttgaaaaccaagtggggtgtttctgacttcatcaaggcgtttattaaa
ttccacggccatgtatatctgagtaagagtttggaaaagttgagccctcttcgagagaag
ttggaagaacagtttaagaagctgctgttccaaaaagctttcaactctcagcagttagtt
catgtcactgtcattaacctgtttcaacttcatcatcttcgtgactttagcaatgaaaca
gagcagcatagttacagccaagatgaacagctatgctggacccagttgctggccctcttt
atgtcttttcttggcatcctctgcaaatgtcctctccagaacgattctcaggagtcctac
aatgcctatccccttcccgcagtcaaggtctccatggactggctaagactccgacctcga
atctttgaggaagcagtggtggatgaaaggcagtacatttggccctggctaatttctctt
ctaaatagtttccatccccatgaagatgatctttcaagtactaatgccacacctcttcca
gaagagtttgaattacaaggattcttggctttaagaccttctttcaggaacttggatttt
tccaaaggccatcagggtattacaggagacaaagagggtcaacagagacgaatacgacag
cagcgtttgatctccatagggaaatggattgctgacaatcagccacggttgattcagtgt
gaaaatgaggtagggaaattgttatttatcacagaaattccagaattaatattagaagac
cccagtgaaaccaaagagaacctcatcctacaagaaacatctgtgatagagtcactagct
actgatggaagcccaggactgaagtcagtgctatctacaggccgaaatccaagcaacaac
tgtgacccaggagaaaaaccagtggtcaccttcaaagagaatgttaaaccacgagaagtg
aacagagaccaaggaagaagctttcctcccaaagaggtaaaatcccaggcggaactaaga
aagactccagtgtctgaagccaggaaaacacctgtcactcaaactcccagtcaagcgaat
aattctcagttcatccccattcatcaccccggagctttccctcctcttcccagccgacca
gggttcccgcccccaacatatgttatcccccctcctgtggcattctctatgggctcaggt
tacaccttcccagctggtgtttctgtcccaggaacctttcttcagtctacagctcactct
ccagcaggaaaccaggtgcaagctgggaaacagtcccacattccttacagccagcaacgg
ccctctggaccagggccaatgaaccagggacctcaacaatcacagccaccttcccagaca
ccccttacatctttaccagctcagccaacagcacagtctacaagccagttgcaggttcaa
gctctagctcagcaacagcaatcccctacaaaagtcataccagctttggggaaaagccca
cctcatcactctggattccagcagtatcaacaggcagatgcctccaaacagctgtggaat
ccccctcaggttcaaggcccactagggaaaattatgcctgtgaaacagccctactacctt
cagacccaagaccctataaaactgtttgagccgtcattgcaacctcctgtaatacagcag
cagcctctagagaaaaaaatgaagcctttccccatggagccatataaccacaatccctca
gaagtcaaggtcccagagttctactgggattcttcctacagcatggctgataacagagca
gtaatggcacagcaaccaaatatggaccgcagaagcaaacggtccccaggagtcttccgt
ccagagcaggaccctgtgcccaggatgccatttgaggatcccaagagctcccctctgctt
cctccggacctgttaaagagtctggctgccttggaggaagaggaagagctgatcttttct
aaccctcctgatctttacccagctttgctgggtcctctcgcctctcttcctggacgaagc
ctctttaaatccttattggagaagccttcagaacttatgtcacattcatcttctttcttg
tccctcactggattctctgtcaatcaggaacgatatccaaacagcagtgtgttcaatgaa
gtgtatgggaaaaacctgacaaccagctccaaggcagaactgaacccctcagttgcctcc
caagaaacatcattgtactccctttttgaagggaccccttggtctccatcacttcctgcc
agttcagatcattcaacaccagccagccagtctcctcattcctccaacccaagcagcctg
cccagttctcctccaacacataaccataattctgctccattctctaattttggacccatt
ggaacgccagataacagggataggcggcctgcagatcggtggaaaactgataaaccagcc
atgggtggttttggcgttgattatctctcagcaacatcatcatctgagagcagttggcat
caggctagcactccaagtggcacctggacaggccacggcccctccatggaggattcctcc
gctgtcctcatggaaaacttaaagtctatctggtccagttccatgatgcatcctggaccc
tccgctctggagcagttgttaatgcagcagaagcagaaacaacagcggggacaaggtgcc
atgaaccctccacactga
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