Chionomys nivalis (European snow vole): 130875368
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Entry
130875368 CDS
T11437
Symbol
Rfc1
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
cnl Chionomys nivalis (European snow vole)
Pathway
cnl03030
DNA replication
cnl03410
Base excision repair
cnl03420
Nucleotide excision repair
cnl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cnl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
130875368 (Rfc1)
03410 Base excision repair
130875368 (Rfc1)
03420 Nucleotide excision repair
130875368 (Rfc1)
03430 Mismatch repair
130875368 (Rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cnl03032
]
130875368 (Rfc1)
03400 DNA repair and recombination proteins [BR:
cnl03400
]
130875368 (Rfc1)
DNA replication proteins [BR:
cnl03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
130875368 (Rfc1)
DNA repair and recombination proteins [BR:
cnl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
130875368 (Rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
AAA_lid_RFC1
BRCT
AAA
PTCB-BRCT
BRCT_2
AAA_22
RuvB_N
AAA_14
Rad17
AAA_5
AAA_16
AAA_33
AAA_18
Zeta_toxin
AAA_17
nSTAND3
AAA_30
AAA_7
RNA_helicase
NTPase_1
NPHP3_N
AAA_28
Motif
Other DBs
NCBI-GeneID:
130875368
NCBI-ProteinID:
XP_057627004
LinkDB
All DBs
Position
6:complement(67160176..67228063)
Genome browser
AA seq
1147 aa
AA seq
DB search
MDIRKFFGVISSGKKPVNETVKKNEKIKPSAGTVKGKKGVKEVKVNNSCKEDASKPKQNN
KKKRIIYDSDSDSEETVQVKNAKKKSEKLPLSSKSGKISRKDPVTYVSETDEDDDFVCKK
ATSKAKENGVSTNSYLGTSNMKKNEENTKTKNKPLSPIKLTPTSVLDYFGTESVQRSGKK
MVASKRKESSQNTDDSRLSDEALAKQLQLDEDAELERQLHEDEEFARTLAMLDEEPKTKM
ARKDPEEGESFSPLQADLSKAENHKSPNKAGHFLNERKTRSPAKPSKGGSAKGSEQPRSS
SGHQREAGSSPKASSKLALTKAKEESSYKDTEPMASRRKENAIELKGEKQTPKKTKSSPA
KKESVSPEDSEKKRTNYQAYRSFLNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIE
REEAKSLIERYGGKVTGNVSKKTNYLIMGRDSGQSKSDKAAALGTKILDEDGLLDLIRTM
PGKKSKYEIAAEAEMKKEKSKLGQTPQKNDQGKRKISPTKKESESKKSKLTPQKRSPAKV
VKKEADVFQRGLDFTEQEVKETSGNSRAQGLAEDSGGDKVESLLWVDKYKPTSLKHIIGQ
QGDQSCAHKLLRWLRNWHKSSPEEKKHAAKFGKLSSKDDGSSFKAALLSGPPGVGKTTTA
SLVCQELGYSYVELNASDTRSKNSLKAVVAESLNNTSIKGFYTSGAAPSVSSKHALIMDE
VDGMAGSEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIRSLIHYCYDLRFQRPRVEQIK
SAMLSIAFKEGLKIPPPAMNEIILGANQDVRQVLHNMSMWCAQSKALTYDQAKTDSQRAK
KDTKLGPFDVARKVFAAGEETAHMSLMDKSDLFFHDYSIAPLFVQENYVHVKPVAAGGDM
KKHLMLLSRAADSICDGDLVDSQIRSKQNWSLLPTQAIYASVLPGELMRGYMTQFPSFPS
WLGKHSSTGKHDRIVQDLALHMSLRTYSSKRTVNVDYLSHIRDALVRPLTSQGVEGVQHV
VTLMDTYYLMREDFENIMEVSSWGGKPSPFSKLDPKVKAAFTRAYNKEVHLTPYSLQAVK
TSRLSTGPALDSEYHDESQEDDSQSDEKEQDAIETDAMIKKKTGSSKSSKPDKDKESKRG
KGRSWKK
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atggacattcggaaattctttggggttatatcaagtgggaaaaagcctgtaaatgagacg
gtaaagaagaatgagaaaataaaaccttcggcgggaactgtcaaaggaaagaaaggagta
aaggaagtcaaggttaataattcctgtaaagaggatgcctccaaaccgaagcagaacaac
aagaaaaagaggatcatctatgattcagattcagactcagaggagacagtgcaggtaaaa
aatgctaaaaagaaatcagaaaaattgccactgtcttctaaatctggtaaaatttctcgg
aaggatcctgttacttacgtttctgagacagatgaagacgatgactttgtatgtaaaaag
gcaacctccaaagcaaaagagaatggagtatctacaaacagttaccttggaacatcaaac
atgaaaaagaatgaagaaaacaccaagactaagaataaacctttatcaccaataaaactt
acaccaacatcagtgctcgattattttggaactgaaagtgtccagagatccggtaagaag
atggtggcgagcaaaagaaaagagtcttctcagaacacggatgactccagattaagtgat
gaggcccttgccaagcagctgcagctcgatgaagacgcagagctggagaggcagttgcat
gaagatgaagagtttgctcgaacattagccatgttggatgaagaacccaagaccaaaatg
gcccgaaaggaccctgaagaaggagaatcattttcacctctccaagctgatctaagcaaa
gcagaaaaccataagagccctaataaagcagggcattttttaaatgaaagaaagacccgc
agtcctgctaagcccagtaagggtgggagcgccaaaggatctgagcagccccgcagctca
tcaggtcatcagagggaagccggttcctctcccaaggccagctccaagctggcacttacg
aaagcaaaagaagaaagttcttacaaagacacagagccgatggcctcaagaagaaaagaa
aatgccattgaactcaaaggagagaaacaaactcctaagaaaaccaaaagttccccagct
aaaaaagagtctgtaagtccagaagattctgaaaagaagcgcactaattatcaagcttat
cgaagcttcttaaatcgggaaggtcccaaagctctgggctccaaagaaatacccaaggga
gctgaaaattgcttggaaggcctgacatttgtgatcacgggcgtgctggagtccattgaa
cgggaagaagccaaatctctaattgaacgttatggggggaaagtaacaggcaatgtgagc
aagaaaaccaactatctcatcatgggccgggacagcggacagtccaagagtgacaaggca
gcagctctgggaacaaaaatccttgatgaagatggtctgttggatctgattcgaactatg
ccaggcaagaaatccaaatatgaaatagctgctgaagctgagatgaagaaagaaaagtcc
aaattggggcaaacaccccaaaaaaatgaccaaggaaaaagaaaaattagtccaaccaag
aaggagtcagagtctaaaaagagcaaactgactccccaaaagcgcagcccagcgaaggtg
gtgaagaaggaagcagatgtgtttcagaggggcctggacttcacggagcaggaggtcaag
gagacgtctggcaacagcagggctcagggtctggctgaggacagcggcggggacaaagtg
gagagcctgttgtgggtggacaagtacaagcccacctcgctcaagcacataatcggacag
caaggtgaccagagctgtgcccacaaactgctgcgctggctcagaaactggcataagagt
tctcccgaagagaagaaacacgcagcaaaatttggcaaactttccagcaaagatgatggt
tccagtttcaaggcagcattgctgtctggccctccgggtgttggcaaaaccactacagct
tctcttgtgtgtcaggaattgggctacagttacgtggaattaaatgcaagtgatactcgg
agtaagaacagtttgaaagcagttgttgctgagtcattgaacaacaccagcatcaaaggc
ttttatacaagcggagcagccccttcggtaagctcgaagcatgctctcatcatggatgag
gtcgatggcatggcaggcagtgaggacaggggcggaattcaggaactcataggcctgata
aagcatactaaaattcctatcatttgtatgtgcaatgatagaaatcaccccaaaattcgc
tctttgattcattattgttatgatcttcgtttccaaagacctcgggttgaacagattaag
agtgcaatgctgtctattgcatttaaagaaggtttgaagatcccccctccagccatgaat
gaaataattttgggagcgaatcaagatgtcagacaggttttacataatatgagtatgtgg
tgtgcacaaagtaaggcactaacgtatgaccaagccaagactgattctcagagggccaag
aaggacaccaaactgggcccatttgatgttgcccggaaggtgtttgcagctggagaggag
actgcacacatgtcactgatggacaaatcggatctctttttccatgactattccatagcc
cccctctttgttcaggagaactatgtccatgtaaagcctgtggctgcagggggtgacatg
aaaaagcacttgatgcttttaagccgggcggcagacagcatatgtgacggtgacttagtg
gacagtcagatccggagtaagcagaactggagtcttctgcccacacaggccatttatgcc
agtgttcttcctggagagttgatgaggggctacatgactcagtttcccagcttcccaagc
tggctggggaagcattcatctacgggcaaacatgaccggattgttcaggacctggccttg
cacatgagtcttagaacttactccagcaaaagaacggtgaacgtggattacctgtcccac
atcagagatgcacttgtgcgacccttgacctcacaaggggtagaaggagttcagcatgtt
gtcacacttatggacacatattatttaatgagagaagactttgagaatatcatggaagtt
agcagctggggtggcaagcccagtcccttttccaagctggatcctaaggtgaaagcagcc
ttcacaagagcttataataaggaggtccacctgaccccatattcgcttcaggcagtaaag
acatcgagactcagcacaggcccagcactggattctgagtaccatgacgagtcacaggaa
gatgacagtcagtctgatgagaaggagcaggatgccatagagactgatgccatgatcaag
aaaaagacaggatcttcaaagtcttcaaaaccagacaaagataaggagtccaaaagagga
aaaggaagaagttggaagaaatga
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