Chionomys nivalis (European snow vole): 130876096
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Entry
130876096 CDS
T11437
Symbol
Htt
Name
(RefSeq) huntingtin
KO
K04533
huntingtin
Organism
cnl Chionomys nivalis (European snow vole)
Pathway
cnl05016
Huntington disease
cnl05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
cnl00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05016 Huntington disease
130876096 (Htt)
05022 Pathways of neurodegeneration - multiple diseases
130876096 (Htt)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cnl03019
]
130876096 (Htt)
04131 Membrane trafficking [BR:
cnl04131
]
130876096 (Htt)
03029 Mitochondrial biogenesis [BR:
cnl03029
]
130876096 (Htt)
Messenger RNA biogenesis [BR:
cnl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
130876096 (Htt)
Membrane trafficking [BR:
cnl04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
130876096 (Htt)
Mitochondrial biogenesis [BR:
cnl03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
130876096 (Htt)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
130876096
NCBI-ProteinID:
XP_057628506
LinkDB
All DBs
Position
6:40396616..40549761
Genome browser
AA seq
3119 aa
AA seq
DB search
MATLEKLMKAFESLKSFQQQQQQQQQPPPPPPPPQPPQPPPQGQPPPHAPPPPPLPGPAE
EPLHRPKKELSATKKDRVSHCLTICENIVAQSLRNSPEFQKLLGIAMELFLLCSDDAESD
VRMVADECLNKVIKALMDSNLPRLQLELYKEIKKNGAPRSLRAALWRFAELAHLVRPQKC
RPYLVNLLPCLTRTSKRPEESVQETLAAAVPKIMASFGNFANDNEIKVLLKAFIANLKSS
SPTVRRTAAGSVVSICQHSRRTQYFYNWLLNVLLGLLVPMEEEHSTLLILGVLLTLRCLV
PLLQQQVKDTSLKGSFGVTRKEMEVFPSAEQLVQVYELTLHHTQHQDHNVVTGALELLQQ
LFRTPPPELLQALTTPGGLGQLTVVQEEARDRGRSGSIVELLAGGGSSCSPVLSRKQKGK
VLLGEEEALEDDSESRSDVSSSAFAASVKSEIGGELATSSGVSTPGSVSHDIITEQPRSQ
HTLQADSVDLSSCDLTSAATDGDEEDILSHSSSQFSAVPSDPAIDLNDGTQASSPISDSS
QTTTEGPDSAVTPSDSSEIVLDGADNQYLGMQIGQPQEEDEEEAAGVLSSEVSDVFRNSS
LALQQAHLLERMGHNRQPSDSSIDKFVSRDEVAEANDPESKACRIKGDIGQPNDDDSAPL
VHCVRLLSASFLLTGEKKALVPDRDVRVSVKALALSCIGAAVALHPESFFSKLYKVPLDT
MESAEEQYVSDILNYIDHGDPQVRGATAILCGTLIYSILSRSRLRVGDWLGNIRTLTGNT
FSLVDCIPLLQKTLKDESSVTCKLACTAVRHCVLSLCSSSYSDLGLQLLIDMLPLKNSSY
WLVRTELLETLAEIDFRLVSFLEAKAESLHRGAHHYTGFLKLQERVLNNVVIYLLGDEDP
RVRHVAAASLTRLVPKLFYKCDQGQADPVVAVARDQSSVYLKLLMHETQPPSHFSVSTIT
RIYRGYSLLPSITDVTMENNLSRVVAAVSHGLITSTTRALTFGCCEALCLLSAAFPVCTW
SLGWHCGVPPLSASDESRKSCTVGMASMILTLLSSAWFPLDLSAHQDALILAGNLLAASA
PRSLRSSWASEEEANSASTRQEEVWPALGDRTLVPMVEQLFSHLLKVINICAHVLDDVTP
GPAIKAALPSLTNPPSLSPIRRKGKEKEPGEQASAPMSPKKGGEASAASRQSDASGPVTA
SKSSSLGSFYHLPSYLKLHDVLKATHANYKVTLDLQNSTEKFGGFLRSALDVLSQILELA
TLQDIGKCVEEVLGYLKSCFSREPMMATVCVQQLLKTLFGTNLASQFDGLASNPSKSQCR
AQRLGSSSVRPGLYHYCFMAPYTHFTQALADASLRNMVQAEQEHDASGWFDVLQKVSAQL
KTNLTSVTKNRADKNAIHNHIRLFEPLVIKALKQYTTTTSVQLQKQVLDLLAQLVQLRVN
YCLLDSDQVFIGFVLKQFEYIEVGQFRESEAIIPNIFFFLVLLSYERYHSKQIIGIPKII
QLCDGIMASGRKAVTHAIPALQPIVHDLFVLRGTNKADAGKELETQKEVVVSMLLRLIQY
HQVLEMFILVLQQCHKENEDKWKRLSRQVADIILPMLAKQQMHIDSHEALGVLNTLFEIL
APSSLRPVDMLLRSMFITPSTMTSVSTVQLWISGILAILRVLISQSTEDIVLSRIQELSF
SPYLISCPVISRLREGDDNSTLGERSEGKQTKNLPEETFSRFLLQLVGILLEDIVTKQLK
VEMSEQQHTFYCQELGTLLMCLIHIFKSGMFRRITAAATRLFTSDGCEGSFYTLENLNAR
VRSMVPTHPALVLLWCQILLLINHTDHRWWAEVQQTPKRHSLSCTKSLNPQISGEEEDSD
SAAQLGMCNREIVRRGALILFCDYVCQNLHDSEHLTWLIVNHIQDLISLSHEPPVQDFIS
AIHRNSAASGLFIQAIQSRCENLSTPTTLKKTLQCLEGIHLSQSGAVLTLYVDRLLGTPF
RALARMVDTLACRRVEMLLAANLQSSMAQLPVEELNRIQEHLQNSGLAQRHQRLYSLLDR
FRLSTVQDSLSPLPPVTSHPLDGDGHTSLETVIPDKDWYLQLVRSQCWTKSDSALLEGAE
LVNRIPAEDMNDFMMSSEFNLSLLAPCLSLGMSEIATGQKSHLFEAARGVTLDRVTSVVQ
QLPAVHQVFQPFLPIEPTAYWSKLNDLLGDAASYQSLTTLARALAQYLVVVSKVPAHLHL
PPDKEGDIVKFMVMTLEALSWHLIHEQIPLSLDLQAGLDCCCLALQVPGLWGLLSSPEYV
THACSLIHCVRFILEAIAVQPGDQLLGPESRSDTPRAIRKEEGDSNIQNPSYITSACEMV
AEMVESLQSVLALGHKRNSTLPSFLTAVLKNIVISLARLPLVNSYTRVPPLVWKLGWSPK
PGGDFGTVFPEIPVEFLQEKEILKEFIYRINTLGWTSRTQFEETWATLLGVLVTQPLVME
QEESPPEEDTERTQIHVLAVQAITSLVLSAMTVPVAGNPAVSCLEQQPRNKPLKVLDTRF
GRKLSMIRGIVEQEIQEMVSQRENTATHHSHQSWDPVPSLLPATTGALISHDKLLLQINS
ERELGNMSYKLGQVSIHSVWLGNNITPLREEEWDEEEEEEADVPAPTSPPVSPVNSRKHR
AGVDIHSCSQFLLELYSRWILPSSTARKTPVILISEVVRSLLVVSDLFTERTQFEMMYLT
LTELRRVHPSEDEILIQYLVPATCKAAAVLGMDKTVAEPVSRLLESTLRSSHLPSQIGAL
HGILYVLECDLLDDTAKQLIPVVSEYLLSNLKGIAHCVNIHSQQHVLVMCATAFYLMENY
PLDVGPEFSASVIQMCGVMLSGSEESTPSIIYHCALRGLERLLLSEQLSRLDTESLVKLS
VDRVNVQSPHRAMAALGLMLTCMYTGKEKASPGRTSDPSPATPDSESVIVAMERVSVLFD
RIRKGFPCEARVVARILPQFLDDFFPPQDVMNKVIGEFLSNQQPYPQFMATVVYKVFQTL
HSAGQSSMVRDWVMLSLSNFTQRTPVAMAMWSLSCFLVSASTSPWVSAILPHIISRMGKL
EQVDVNLFCLVATDFYRHQIEEEFDHRAFQSVFEVVAAPGSPYHRLLACLRNVHKVTTC
NT seq
9360 nt
NT seq
+upstream
nt +downstream
nt
atggcaacccttgaaaagctgatgaaggcttttgagtcgctcaagtcgttccaacagcaa
caacagcagcagcagcagccgccgccaccgccgccgccgcctcagccccctcagccgccg
cctcaggggcagccgccaccgcatgcaccgccgccaccgccgctgccgggtccggccgag
gagccgctgcaccgaccaaagaaggaactctcagccaccaagaaggaccgtgtgagtcat
tgtctaacaatatgtgaaaatattgtggcacagtctctcagaaattctccagaatttcag
aaactcttgggcattgctatggagctgtttctgctgtgcagcgacgatgcggagtcagac
gtcaggatggtagctgatgagtgcctcaacaaagtcatcaaagcgttgatggattctaat
cttccaaggctacagctagaactctataaggaaattaaaaagaatggtgctcctcgaagt
ttgcgtgcagccctgtggaggtttgctgagctggctcacctggttcgacctcaaaaatgc
aggccttacctagtgaaccttcttccgtgcctgacccgaacaagcaagagacctgaggaa
tcagttcaggagaccttggctgcagctgttcccaaaattatggcttcttttggaaatttt
gcaaatgacaatgaaattaaggttctgttgaaagctttcatagcaaatctgaagtcaagt
tctcccactgtccgacggacagcagctggctcagtagtgagcatctgccagcactccagg
aggacacagtacttctataattggctcctaaatgtgctcctaggtctgctggttcccatg
gaggaagaacattccactctcctgatcctcggtgtcctgctcacattgaggtgtctagtg
cccttgctccagcagcaggtcaaggacacaagtctaaaaggcagttttggggtgacacgg
aaagaaatggaagtttttccttctgcagagcagcttgtccaggtttatgaactgactttg
catcacacgcagcaccaagaccacaatgtggtgacaggggctctggagctcttgcagcag
ctcttccgtactcctcctcctgagctgctgcaagcactgacaacaccaggtggtcttggg
cagctcactgtggttcaagaggaggccagggaccgaggccgcagcgggagcattgtggaa
cttttagctggagggggttcctcgtgcagccctgttctctcaagaaaacaaaaaggcaaa
gtgctcttaggagaagaagaagccttggaagatgactcggagtccaggtcagatgtcagc
agctcagcctttgcagcctctgtgaagagtgagattggtggagagcttgctacttcttcc
ggtgtctccactcctggttctgtaagtcatgacatcatcactgagcagccacggtcccag
cacacacttcaagcagactctgtggatttgtcgagctgtgacttgaccagtgctgctact
gatggagatgaggaggacatcttgagccatagctccagccagttcagtgctgtcccatcc
gaccctgccatcgacctaaatgatgggacccaggcctcctcacccatcagtgatagctct
cagaccaccactgaagggcctgattcagctgtgactccttccgacagttctgaaattgta
ttagatggtgctgacaaccagtatttaggcatgcagataggacagccacaggaggaagat
gaggaggaggctgcgggtgttctctccagtgaagtatcagatgttttcagaaactcttct
ctggcccttcaacaagcacatttattggagagaatgggtcataacagacaaccttctgac
agcagtatagataagtttgtatccagagatgaagttgctgaagcgaatgacccagaaagc
aaggcttgccgaatcaaaggtgacatagggcaacctaatgatgatgattctgctcctctg
gtccattgtgtccgccttttatctgcttcctttttgttaactggggaaaagaaagcactg
gttccagacagagatgtgagggtcagtgtgaaggccctggccctcagctgtattggtgca
gccgtggcccttcatccagaatctttcttcagcaaactgtataaagtacctcttgacacc
atggaaagtgctgaggaacagtatgtctctgacatcttgaactacatcgatcatggagac
ccacaggtccgaggagctactgccattctctgtggaaccctcatctactccatactcagc
aggtctcggctccgtgttggcgactggctgggcaacattagaacactgacaggaaatacg
ttctctctggtggactgcattcctttgctgcagaaaactttgaaggatgagtcttctgtt
acttgcaagttggcttgtacagctgttaggcactgtgtcctgagtctttgcagtagcagc
tacagtgacttgggattacaactgctcattgatatgttgcctctgaagaacagctcctac
tggttggtgaggactgaactgctggaaacccttgcagagattgacttcaggctggtgagt
tttttggaggcaaaagcagaaagtttacaccgaggggctcatcattatacagggttttta
aaactacaagaacgagtgcttaataatgtggtcatttatttgcttggagatgaagacccc
agggtgcgacacgttgctgcagcatcgctaacaaggcttgtcccaaagctgttctataaa
tgtgaccaaggacaggctgatccagtagtggctgtagcaagagatcaaagcagtgtttac
ctgaaactcctcatgcacgagacacagccaccatcacacttctctgtcagcaccataacc
agaatctatagaggttatagtttactaccaagcataacagacgtcactatggaaaacaac
ctctcaagagttgttgctgcagtttctcatggactcattacatccaccacacgggcgctc
acatttggatgttgtgaagccttgtgtcttctttcagcagcctttccagtttgcacttgg
agcttaggttggcattgtggagtgcccccactgagtgcctctgatgagtccaggaagagc
tgcactgttgggatggcctccatgattctcaccctgctttcatcagcttggttcccattg
gatctctcagcccatcaggatgccttgattttggctggaaacttgcttgcggccagtgcc
cccaggtctctgagaagttcatgggcctctgaagaagaagccaattcagcatctaccaga
caggaggaagtttggcctgctctgggtgaccggacactggtgcccatggtagaacagctt
ttctcccacctgctgaaagtgatcaatatctgtgctcacgtcttggatgatgtgactcct
ggaccagcaatcaaggcagctttgccttctctaacaaacccgccttctctaagtcctatt
cgacggaaagggaaagagaaagaaccaggagaacaagcttctgctccaatgagtcccaag
aaaggtggtgaggccagtgcagcctctcgacaatcagacgcctcaggacctgtcacagca
agtaaatcttcttcattggggagtttctaccatctcccttcctacctcaaactccatgat
gtcctgaaagccactcatgccaactataaggtcaccttagatcttcagaacagcactgaa
aagtttgggggattcctgcgctctgccttggatgtcctctctcagattctagagctggca
acactgcaggacattggaaagtgtgttgaagaggtccttggatacctgaaatcctgtttt
agtcgagaaccgatgatggcaactgtctgtgttcagcagctattgaagactctctttggg
acaaacttggcctcacagtttgatggcttggcttccaaccccagcaagtctcaatgccga
gcacaacgtcttggctcttccagtgtgaggccaggcttatatcactactgcttcatggca
ccatacacgcacttcacgcaggccttggctgatgccagcctgaggaacatggtgcaggcg
gagcaggaacatgatgcctcggggtggtttgatgtactccagaaagtatctgcccaactg
aagacaaacctcacaagcgtcacaaagaaccgtgcagataagaatgctattcacaatcac
attagattatttgagcctcttgttataaaagctctgaagcagtacaccaccacgacatct
gtacagttgcagaagcaggttttggatttgcttgcacaactggttcagctgcgggtcaat
tactgtctgctggattcggatcaggtgttcatcggttttgtgctgaagcagtttgagtac
attgaagtgggccagttcagggaatcagaggcaattattccaaatatatttttcttcctg
gttttactgtcttatgagcgctaccattcaaaacagatcattggaattcctaaaatcatc
cagctatgtgatggcatcatggccagtggaaggaaggctgttacacatgccatacctgct
ctgcagcccattgtccatgacctgtttgtgttaagaggaacaaacaaagctgatgctggg
aaagagcttgaaacccagaaggaggtggtggtgtcgatgcttttaagacttatccagtac
catcaggtgctggagatgtttatcctcgttctgcagcagtgccacaaagagaatgaggac
aagtggaaacggctatctcggcaggttgcggacatcatcctgcccatgttagccaagcag
cagatgcacattgattctcatgaagcccttggagtattaaataccttgtttgagattttg
gctccttcctcactacgtcccgtggatatgcttttgcggagtatgttcatcactccaagc
acaatgacctctgtaagcaccgtgcagctatggatatctggaatcctagccattctgagg
gttctcatttcccagtcaaccgaagatattgttctttctcgtattcaggaactctccttc
tctccatatttaatctcctgtccagtaattagcaggttaagagagggagacgataattca
acattaggagaacgcagtgaagggaaacaaacgaagaatttgccagaagaaacattctca
aggtttcttttacagttagttggaattcttttagaggacattgttacaaaacagctcaaa
gtggaaatgagtgaacagcagcatacattctactgtcaagagctaggcacactgctcatg
tgtctcatccacatcttcaaatctggaatgtttcggagaatcacagcagctgccactaga
ctcttcaccagtgatggctgtgaaggcagcttctatactctagagaacctcaatgcacgg
gttcgatccatggtgcccacgcacccagccctggtactgctctggtgtcagatcctgctg
ctcatcaatcacactgaccaccgatggtgggcagaggtgcagcaaacacccaaaaggcac
agtttgtcctgcacgaagtcacttaacccccagatatctggtgaagaggaggattctgac
tcagcagctcagcttggaatgtgcaatagagaaatagtgcgaagaggggcccttattctc
ttctgtgattatgtctgtcagaatctccatgactcagaacacttaacgtggctcattgta
aatcacattcaagatctgatcagcttgtcccatgagccaccagtacaagactttattagt
gccattcatcgtaattctgcagctagtggccttttcatccaggcaattcagtctcgttgt
gaaaatctttcaactccaaccactctgaagaaaacacttcagtgcttggaaggcatccat
ctcagccagtctggtgctgtgctcacattgtatgtggacaggctcctgggcactcccttc
cgtgcactggctcgcatggttgacactctggcctgtcgccgcgtagaaatgcttttggca
gcaaatttacagagcagcatggcccagttgccagtggaagaactgaacagaatccaggag
cacctccagaatagtgggcttgcacaaagacaccaaaggctctactccctgctggacagg
ttccgactctctactgtgcaggactcacttagccccttgcccccagttacttcccaccca
ctggatggggatgggcacacatctttggaaacagtgattccagacaaagactggtacctt
cagcttgtaagatcccagtgttggaccaaatcagattctgcactgctggaaggtgcagag
ttggtgaatcgcatccctgctgaagacatgaatgacttcatgatgagctcggagttcaac
ctcagccttttggctccttgcttaagccttggcatgagtgagattgctactggccagaag
agtcacctttttgaagcagcccgtggggtgactctggaccgggtgaccagtgttgttcag
cagcttcctgctgtccatcaagtcttccagccttttctgcctatagagcccacagcctac
tggagcaagttgaatgatctacttggtgatgctgcatcataccagtctctgaccacactt
gcccgtgccctggcacaatacctggtggtggtctccaaagtgcctgctcatttgcacctt
ccccctgacaaggagggggacatagtgaagtttatggtaatgacacttgaggccctgtca
tggcatttgatccatgagcagatcccactgagtctggacctccaagccgggctagactgc
tgctgcctggcactacaggtgcctggcctctgggggctgctgtcctccccagagtatgtg
acccatgcctgctcccttatccactgcgtgcgattcatcctggaagccattgcagtgcag
cctggggaccagcttcttggtccagaaagcaggtcagatactccaagggctatcagaaag
gaagaaggagactcaaacatacaaaatcccagttatatcacttcggcctgcgagatggtg
gcagagatggtggaatccctgcagtcagtgctggccttgggccacaaaaggaacagtacc
ctgccttcattcctcacggcagtgcttaagaatattgtcatcagtctggcgcgtctccct
ctggtcaacagctatacgcgtgtgccccctctggtatggaaacttgggtggtcacccaaa
cctggaggggatttcggcacagtgttccctgagatccctgtagaattcctccaggagaag
gagatcctcaaggagttcatctatcgcatcaacaccctagggtggaccagtcgtacccag
ttcgaagaaacttgggccaccctccttggtgtcttggtgacccagcccttggtgatggaa
caggaggagagcccaccagaggaagatacagaaaggacccagatccatgtcctggctgtg
caggccatcacctctctagtgctcagtgcaatgactgtgcctgtggctggcaatccagct
gtaagctgcttggagcaacagccccggaacaagcctctgaaggttctcgataccagattt
ggaagaaaattgagcatgatcagagggattgtagaacaagagatccaagaaatggtttcc
cagagagagaatactgccactcaccattctcaccaatcctgggatcctgtcccttccctg
ttgccagctactacaggtgccctcatcagccatgacaaactactactgcagatcaactca
gagcgggagctaggcaacatgagctacaagctgggccaggtatccatacactctgtgtgg
ctagggaacaatatcacacccctgagagaggaggaatgggatgaagaggaagaggaagag
gctgatgttcctgcaccaacatcaccacctgtgtctccagtcaattccagaaaacaccgt
gctggggttgatattcactcctgttcgcagtttctgcttgaattgtacagccgctggatc
ctgccatccagtacagccagaaagacccctgtcatcctgatcagtgaagtggttcggtct
cttctcgtggtgtcagacttattcactgaacgcacccagtttgaaatgatgtatctaacg
ctgacagaacttcggagagtgcacccttcagaagatgaaatcctcattcagtacctagta
cctgccacttgtaaggcagctgctgtccttggtatggacaaaactgtggcagaaccagtc
agccgcctactggagagcacactcaggagcagccacctccccagccagatcggagccctg
catggcatcctttatgtgttggagtgtgacctcttggatgacactgcaaagcagctcatt
ccagttgttagtgaatatctgctgtccaatctcaaaggaatagcccactgcgtgaacatt
cacagccagcaacatgtgctggtgatgtgtgccactgcgttctatctgatggaaaactac
cctctggatgtggggccagaattttcagcatctgtgatacagatgtgtggagttatgctg
tctggaagtgaagagtccaccccctccatcatttaccactgtgccctccggggtctggag
cgtctcctgctgtctgagcagctctctcgcttagatacagagtctttggtcaagctaagc
gtggacagagtcaatgtacaaagcccacatcgggccatggcagccctaggcctgatgctc
acctgcatgtacacaggaaaagaaaaagccagtccgggcagaacctctgaccccagccct
gctacgcctgatagtgagtctgtgattgttgctatggagcgggtatctgttctctttgat
aggatccgcaaggggtttccctgtgaagccagggtcgtggcaaggatcctgcctcagttc
ctagacgacttcttcccacctcaagatgtcatgaacaaagtcattggagagtttctgtcc
aaccagcagccatacccacaattcatggccactgtcgtatacaaggtttttcagactctg
cacagtgctgggcagtcatccatggtcagggactgggtcatgctgtccctgtccaacttc
acacaaagaactccagttgccatggccatgtggagcctctcctgcttccttgtcagcgca
tctaccagcccatgggtttcagcgatcctcccacacatcatcagcaggatgggcaaactg
gagcaggtggatgtgaaccttttttgcctggttgccacagacttctacagacaccagata
gaggaggaattcgaccacagggctttccagtctgtgtttgaggtggtggcggcaccagga
agtccataccaccggctgcttgcttgtttgcgaaatgtccacaaggtcaccacctgctga
DBGET
integrated database retrieval system
