Chionomys nivalis (European snow vole): 130877206
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Entry
130877206 CDS
T11437
Symbol
Col1a1
Name
(RefSeq) collagen alpha-1(I) chain
KO
K06236
collagen type I alpha
Organism
cnl Chionomys nivalis (European snow vole)
Pathway
cnl04151
PI3K-Akt signaling pathway
cnl04510
Focal adhesion
cnl04512
ECM-receptor interaction
cnl04518
Integrin signaling
cnl04611
Platelet activation
cnl04820
Cytoskeleton in muscle cells
cnl04926
Relaxin signaling pathway
cnl04933
AGE-RAGE signaling pathway in diabetic complications
cnl04974
Protein digestion and absorption
cnl05146
Amoebiasis
cnl05165
Human papillomavirus infection
cnl05205
Proteoglycans in cancer
cnl05415
Diabetic cardiomyopathy
Brite
KEGG Orthology (KO) [BR:
cnl00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
130877206 (Col1a1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
130877206 (Col1a1)
04518 Integrin signaling
130877206 (Col1a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
130877206 (Col1a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
130877206 (Col1a1)
09150 Organismal Systems
09151 Immune system
04611 Platelet activation
130877206 (Col1a1)
09152 Endocrine system
04926 Relaxin signaling pathway
130877206 (Col1a1)
09154 Digestive system
04974 Protein digestion and absorption
130877206 (Col1a1)
09160 Human Diseases
09161 Cancer: overview
05205 Proteoglycans in cancer
130877206 (Col1a1)
09172 Infectious disease: viral
05165 Human papillomavirus infection
130877206 (Col1a1)
09174 Infectious disease: parasitic
05146 Amoebiasis
130877206 (Col1a1)
09166 Cardiovascular disease
05415 Diabetic cardiomyopathy
130877206 (Col1a1)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
130877206 (Col1a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cnl00536
]
130877206 (Col1a1)
Glycosaminoglycan binding proteins [BR:
cnl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
130877206 (Col1a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
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GFIT
Other DBs
NCBI-GeneID:
130877206
NCBI-ProteinID:
XP_057630247
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Position
7:74977846..74994252
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AA seq
1453 aa
AA seq
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MFSFVDLRLLLLLGATAFLTHGQEDIPEVTCIHNGVKIPNGETWKADICLICICHNGTAV
CDDVVCQENLDCPNPQRREGECCAFCPEEFESPNQELIGVQGPKGDRGPQGPRGPAGPPG
QDGIPGQPGLPGPPGPAGPPGPPGLGGNFAPQMSYGYDEKSAGVSVPGPMGPSGPRGLPG
PPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQG
ARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERG
RPGAPGPAGARGNDGATGAAGPPGPTGPTGPPGFPGAVGAKGEAGPQGARGSEGPQGIRG
EPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPSGAPGPKG
NSGEPGAPGNKGDTGAKGEPGPAGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPG
SRGFPGADGVAGPKGPAGERGAPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDG
KTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGTAGEPGKAGERGVPGPPGPVGPAG
KDGEAGAQGAPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPG
PSGARGERGFPGERGVQGPPGPAGPRGNNGAPGNDGAKGDTGAPGAPGSQGAPGLQGMPG
ERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGETGPSGPAG
PTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGETGTKGDSGPPGPAGPAGPPG
PIGNVGAPGPKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPVGKEGGKGPRG
ETGPAGRPGEVGPPGPPGPAGEKGAPGADGPAGSPGTPGPQGIAGQRGVVGLPGQRGERG
FPGLPGPSGEPGKQGPSGSSGERGPPGPMGPPGLAGPPGESGREGSPGAEGSPGRDGSPG
PKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPIGPAGARGPAGPQG
PRGDKGETGEQGDRGIKGHRGFSGLQGPPGSPGSPGEQGPSGASGPAGPRGPPGSAGAPG
KDGLNGLPGPIGPPGPRGRTGDSGPVGPPGPPGPPGPPGPPSGGYDFSFLPQPPQEKAHD
GGRYYRADDANVVRDRDLEVDTTLKSLSQQIENIRSPEGSRKNPARTCRDLKMCHSDWKS
GEYWIDPNQGCNLDAIKVFCNMETGQTCVFPTQPSVPQKNWYISTNPKEKKHVWFGESMT
DGFQFEYGSEGSDPADVAIQLTFLRLMSTEASQNITYHCKNSVAYMDQQTGNLKKSLLLQ
GSNEIELRGEGNSRFTYSTLVDGCTSHTGSWGKTVIEYKTTKTSRLPIIDVAPLDIGAPD
QEFGLDIGPACFV
NT seq
4362 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggacctccggctcctgctcctcttaggggccactgccttcctgacg
cacggccaagaagacatccctgaagtcacctgcatacacaatggcgtaaagatccctaat
ggtgagacgtggaaagccgatatctgcttgatctgtatctgccacaatggcacggccgta
tgcgatgacgtggtttgccaggaaaacttggactgtcccaacccccaaagacgtgagggc
gagtgctgtgctttctgcccagaagaatttgaatcaccaaaccaagaactcataggagtt
cagggacccaagggagaccgcggccctcaaggcccaaggggacccgctggcccccctgga
caagatggcatccctggacagcctgggcttcctggtcctcctggtcctgctggtccaccc
ggcccccctggcctcggaggaaactttgctcctcagatgtcctatggctatgacgagaaa
tcagctggagtttccgtgcctggccccatgggtccttctggtcctcgtggtctccctggc
ccccctggtgcacccggtcctcagggtttccaaggcccccctggtgaacctggcgagcct
ggcgcttcaggtccaatgggtccccgtggccccccaggcccccctggcaagaacggagat
gatggagaagctggtaaacctggccgtcctggtgagcgtggacctcctgggcctcagggt
gctcggggattgcctggaacagctggcctccctggaatgaagggacacagaggtttcagt
ggtttggatggtgccaaaggagatgctggtcctgctggccctaagggagagcctggcagt
cctggtgaaaatggagctcctggccagatgggtccccgaggcctgcctggtgagagaggt
cgccctggagcccctggccctgctggtgctcgtggtaacgatggtgctactggtgcagct
gggcccccgggtcccactggccccactgggcctcctggattccctggtgcagttggtgct
aagggtgaagctggtccccagggagcccgaggctctgaaggtccccagggtattcgtggt
gagcccggaccccctggccctgctggtgctgccggccctgctggaaatcctggtgctgat
ggacaacctggtgctaaaggtgctaacggtgctcctggtattgctggtgctcctggcttc
cctggtgcccgaggcccctctggaccccagggccccagtggcgctccaggtcccaagggt
aacagtggtgaacctggtgctcctggcaacaaaggagacactggtgccaaaggagagccc
ggccctgctggtgttcaaggtccccctggccctgctggggaagaaggaaaacgaggagcc
cgtggcgaacctggacctactggcctgcctggacctcctggcgagcgtggtggacctgga
agccgtggtttccctggtgctgatggtgttgctggccccaagggtcctgctggtgaacgt
ggtgctcccgggcctgctggtcccaaaggttctcctggtgaagctggtcgccctggtgaa
gctggtctccctggtgccaagggtctcactggcagccctggaagccctggtcctgatggc
aaaactggcccccctggtcccgctggtcaagatggtcgccctggacccccaggtcctcct
ggagcccgtggccaggctggtgtgatgggattccctgggcctaagggcactgctggagaa
cctggaaaggctggagagcggggcgttcctggaccccctggccctgtgggtcctgctggc
aaagatggagaagccggagctcagggagcccctggccctgctggtcctgctggtgagaga
ggcgaacaaggccctgctggctcccccggattccagggtctccccggccctgctggtcct
cctggtgaagcaggcaagcccggtgaacagggtgtccctggagaccttggtgcccctgga
ccctctggagcaagaggcgagcgaggtttccctggcgagcgtggtgtacaaggtccccca
ggtcctgctggtccccgtggaaacaatggtgctcccggcaatgatggtgccaagggtgat
actggtgcccccggagctcccggtagccaaggcgctcctggtcttcagggaatgcctggt
gaacgtggtgcagctggtcttccaggtcctaagggtgacagaggcgatgctggtcccaaa
ggtgctgatggttctcctggcaaagatggcgtccgtggtctgactggtcccattggtcct
cctggccctgctggtgcccctggtgacaagggagaaactggtcccagcggtcctgctggt
cccaccggagcccgtggtgcccccggagaccgtggtgagcctggcccccctggccctgct
ggtttcgctggcccccctggtgctgatggccaacctggtgctaaaggtgaacctggtgaa
actggtactaaaggcgacagtggtcctcctggccccgctggacctgctggacctcctggc
cccattggtaacgttggtgctcctggacccaaaggtgctcgtggctctgctggtccccct
ggtgctactggtttccctggtgctgctggccgtgttggtccccctggcccctctggaaat
gctggaccccctggccctcctggtcctgttggcaaagaaggaggcaaaggtccccgtggt
gagactggtcccgcgggacgtcctggtgaagttggtcccccaggtccccctggccctgct
ggtgagaaaggagcccctggtgctgatggacctgctggctctcctggtacacctggacct
cagggtattgctggacagcgtggtgtggttggtctgcccggtcagagaggagaaagaggc
ttccctggtcttcctggcccctctggcgaacccggcaaacaaggtccttctggatcaagt
ggtgaacgtggtccccctggccccatgggtccccctggattggctggcccccctggtgaa
tctggacgtgagggatcccctggtgctgaaggctcccctggaagagatggctctcctggc
cccaagggtgaccgtggtgagactggccctgctggcccccctggtgcccctggtgctccc
ggtgctcctggccctgttggccctgctggcaagagtggcgaccgtggtgagactggtcct
gctggtcctgctggtcccattggccctgctggtgcccgtggccctgctggaccccaaggt
ccccgtggtgacaagggtgagacaggcgaacaaggtgacagaggcataaagggtcaccgt
ggcttctccggtctccagggtcctcctggctctcctggttctcctggtgaacaaggtccc
tctggagcttctggtcctgcaggtccccggggtccccctggctctgctggtgctcctggc
aaagatggactcaacggtctccccggccccattggccctcctggtcctcgaggtcgcacc
ggtgacagcggtcctgttggtcctcccggccctcctggaccccctggtcctcctggtcct
cccagtggcggttacgacttcagcttcctgcctcagccaccccaagagaaggctcatgat
ggtggccgctactaccgggctgatgatgccaacgtggttcgtgaccgtgaccttgaggtg
gacaccactctcaagagcctgagccagcaaatcgagaacatccgaagccccgaaggcagc
cgcaagaaccccgcccgcacgtgccgtgacctcaaaatgtgccactctgactggaagagc
ggagaatactggattgaccctaaccaaggctgcaacctggatgccatcaaggtcttctgc
aacatggagacaggccagacctgtgtgttccccactcagccctctgtgccccagaagaac
tggtacatcagcacaaaccccaaggagaagaagcatgtctggttcggcgagagcatgact
gatgggttccagttcgagtacggaagcgagggctccgatcctgctgacgtggccatccag
ctcaccttcctgcgcctgatgtccaccgaggcctcccagaacatcacctaccactgcaag
aacagcgtggcctacatggatcaacagaccggcaacctcaagaagtccctgctcctccag
ggttccaacgagatcgagctccggggcgagggcaacagccgcttcacctacagcaccctt
gtcgacggctgcacgagtcatactggaagttggggcaagacagtcatcgaatacaaaacc
accaagacctcccgcctgcccatcatcgatgtggctcccttggacattggtgccccagac
caggaattcggattagacattggtcctgcctgcttcgtgtaa
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