Chionomys nivalis (European snow vole): 130878193
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Entry
130878193 CDS
T11437
Symbol
Ciita
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
cnl Chionomys nivalis (European snow vole)
Pathway
cnl04612
Antigen processing and presentation
cnl05145
Toxoplasmosis
cnl05152
Tuberculosis
cnl05164
Influenza A
cnl05340
Primary immunodeficiency
Brite
KEGG Orthology (KO) [BR:
cnl00001
]
09150 Organismal Systems
09151 Immune system
04612 Antigen processing and presentation
130878193 (Ciita)
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
130878193 (Ciita)
09171 Infectious disease: bacterial
05152 Tuberculosis
130878193 (Ciita)
09174 Infectious disease: parasitic
05145 Toxoplasmosis
130878193 (Ciita)
09163 Immune disease
05340 Primary immunodeficiency
130878193 (Ciita)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
cnl01001
]
130878193 (Ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
cnl04054
]
130878193 (Ciita)
Enzymes [BR:
cnl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
130878193 (Ciita)
Protein kinases [BR:
cnl01001
]
Serine/threonine kinases: Other
TAF1 family
130878193 (Ciita)
Pattern recognition receptors [BR:
cnl04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
130878193 (Ciita)
BRITE hierarchy
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Ortholog
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GFIT
Other DBs
NCBI-GeneID:
130878193
NCBI-ProteinID:
XP_057632007
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Position
7:complement(4338490..4389922)
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AA seq
1201 aa
AA seq
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MNHFQAILAQVRMLLSSQQPRQVQTLLDSLLEEELLSREYHCALLREPDGEALARKISLS
LLEKGGLGLACSSWVHSRLQDPVLERVTSYRDHGGHSLCATMELGLPEGSYLELLNSDAD
PLHLYHLCDQMDLAGEEIELSSEPDTDTINCDQFSKLLQDMEGDEETREAYANIAELDQY
VFQDTQLEGLTKDLFIEHIGAEEGFGESIEVSGEAGQRPQKRRSTEEHPTDSKHRKLAES
SSMPILTGSFLMGPASLSAMPYLSPTLSNQEPVPSHLYLEGAVQTSGPPSRSSLNCLDLP
IGHIQLLPTLPQGLLQISGAGTSLSSVLIYHGEMPQVNQAVPSGSPNVPSLPKSPGRPGS
TSPFAPSAADLPSMPEPALTSRVNETEDTTSPSPCQEGPESSIKLPKWPESVERFQHSLQ
DKYRVKPESLSSPLVAMELVRARLERGSNKSQERELATPDWTERQLAHSGLAEVLQVVSS
RRWPRETQVVAVLGKAGQGKSHWARMVSQTWARGQLPQYDFVFYVPCHYLDRPGDSYHLR
DLLCPPSLQPLVMDDEVLGHIVRQPDRVLLILDAFEELEAQDGLLHGPCGPLPPEPCSFR
GLLAGLFQRKLLRGCTLLLTARPRGRLAQSLSKADAIFEVPSFSTKQAQTYMRHYFENLG
TAGDQDKALGLLEHQPFLLTHSHSPALCRAVCQLSKALLEQGTEAQLPCTLTGLYVSLLG
PAVRDSPPGALTELAKLAWELGRRHQSTLQESQLLSVEVRTWAVTQGLVQPTLGTTEDQL
AFSSFLLQCFLGAVWLAQCDEIRDKELPQYLALTPRKKRPYDNWLEGVPRFLAGLVFQPR
TQCLGALVEPAVTERKRKVLTRYLKRLQLGTLRASRLLELLHCAHETQEPGIWEHVTHQL
PEHLSFLGTRLTPPDVHMLGRALETASQDFSLDLRQTGIEPSGLGNLVGLSCVTSFRASL
SDTMVLWESLRQQGESQLLQAAEEKFTIEPFKAKSPKDVEDLDSLVQTQRLRNPSEDAAE
ALPAIRDLKKLEFALGPVLGPQAFPTLAKILPVFSSLQHLDLDSLSENKIGDDGVSKLSA
TFPQLKVLETLNLSQNSITDVGACKLAEALPALAKSLLRLSLYNNCIHDAGAKSLAQVLP
DMVSLRVMDVQFNKFTAAGAQQLASSLQKCPQVETLAMWTPTIPFGVQEHLQQLDSRISL
R
NT seq
3606 nt
NT seq
+upstream
nt +downstream
nt
atgaaccacttccaggccattctggctcaggtgcggatgctgctctccagccagcagccc
aggcaggtgcagaccctcctggacagcctgctggaagaagagctgctctcccgggaatac
cactgtgccctgctccgggagcctgacggcgaagctctggcccggaagatttctctgagc
ctgctggagaaagggggcttaggcttggcttgctcgagctgggtccatagcaggctgcag
gacccagtgttagagagggtcaccagctacagggaccatggaggtcatagtctgtgtgcc
accatggaattggggcttccagagggtagctacttggagctccttaacagcgatgctgac
cccctccacctctaccacttgtgcgaccagatggacctggctggagaggagatcgagctc
agctcagagccagacacagacaccatcaactgtgaccagttcagtaagctgctgcaggac
atggaaggggatgaagagaccagggaggcctatgccaacatcgcggaactggatcagtac
gtgtttcaggacacgcagctggagggcctcaccaaggacctcttcatagagcacattgga
gcagaggaaggcttcggtgagagcattgaggtttctggagaagcaggacagaggccccag
aagagacgctccacagaagagcaccctacggattccaaacacaggaagctagccgagtcc
tcttccatgcccatattgactggcagcttcctgatggggccagcaagcctctccgccatg
ccttatttatcacctactctatccaatcaagagccagtgcccagccatttatacctggag
ggagctgttcagacatctgggcccccctctaggtcctcactgaactgtctggatctcccc
atcggacacatccagcttcttcctactctgccccagggacttttgcaaatctcaggggct
ggcacaagtctctccagtgttctgatctaccatggtgagatgccccaagttaaccaagca
gtcccttcaggcagccccaatgtccccagcctccccaaatccccagggcggccgggctcc
accagcccctttgcaccatctgcagctgacctgcccagtatgcctgaacctgcgctgacc
tcccgtgttaatgaaacagaggacacaacatccccctccccatgccaggaaggtcctgag
tcttccatcaagcttccaaaatggccagagtctgtggagcggttccagcactccctgcag
gacaagtaccgggtgaagcctgagagcctgagcagtcccctggtagccatggagctggta
cgggccaggttggagagaggcagcaacaagagccaggaaagggagctagccactccagac
tggacagagcgccagctagcccatagtggcctagctgaggtgcttcaggtcgtcagcagc
cgccggtggccacgagagacacaggtggtcgctgtgctgggcaaggctggccaaggcaag
agccactgggcccggatggtgagtcagacctgggcccgtggccagttgccacaatatgac
tttgtcttctatgtcccatgtcactacttggatcgtccaggcgactcctatcacctgcgc
gatctgctctgtcccccaagcctgcagccactggtcatggatgatgaggtcttaggtcac
atcgtgaggcaaccggaccgtgtcctgctcattctagatgcttttgaggagctagaggcc
caagatggtctcctgcacggaccatgtggacctctgcccccagagccctgctccttccgg
ggactgctagctgggctgttccagcggaagctgctgcgcggctgtaccctgctcctcacg
gcccggccccggggccgcctggctcagagcctgagcaaggcagacgccatcttcgaggtg
cccagcttctctactaaacaggcccagacttatatgaggcactactttgagaacttggga
acagcaggggaccaagacaaggccctgggcctcctggagcaccagccctttctcctcacc
cacagtcacagtcctgctctgtgcagggctgtgtgccagctctccaaggccctgctggaa
cagggcacagaggcccagcttccttgtacacttacaggactctatgtcagcctgctgggc
cctgcagtccgagacagtcctccgggggccttaactgagctggccaagctggcctgggag
ctaggccgcagacaccaaagcaccttgcaagagagccagttactatccgtggaggtgagg
acctgggcagtgacccaaggcttggtgcagcccaccctggggaccacagaggaccagctg
gccttctctagttttctgctacagtgcttcctgggtgctgtgtggctcgcacagtgtgat
gaaatcagagacaaggagctgccacagtacctggccttgaccccaaggaagaagagaccc
tatgacaactggctggagggtgtaccacgctttctggctggattagttttccagcctcga
acccagtgcctgggagctctggtggagcctgcagtgacagaaaggaaacggaaagttctt
accaggtacctgaagcgcctacagctggggacgctgcgggccagccgactgctggagctg
ttacattgtgcccatgagacacaggaacctgggatttgggagcatgtaacacaccagctc
cctgagcatctctccttcctgggcacccggctcacacccccagatgtgcacatgctgggc
agggccctagagacggccagccaggacttctccctggaccttcgtcaaactggcattgag
ccctctggactgggaaacctcgtgggactcagctgtgtcaccagtttcagggcctccttg
agcgacacaatggtgctatgggagtccctacggcagcagggagagtcccagctactccag
gcagcagaggagaaattcaccattgagccattcaaggccaagtctcccaaggatgtggaa
gacctggacagcttggtgcagacccagaggctgagaaacccctcggaggatgcagccgaa
gctcttcctgccatccgggaccttaagaaactagagtttgcgttgggcccggtattgggc
ccccaggctttccccacactggcaaagatccttcctgtgttctcatccttgcagcacctg
gacctggactcactcagtgagaacaagattggggacgacggtgtgtcgaagctctcagcc
acctttcctcagctcaaggtcctggagacgctcaacctgtcccagaacagcatcacggat
gtgggtgcctgcaagcttgcggaagccctgcctgcccttgccaagtccctcctaaggctg
agcctgtacaataactgcatccatgatgcaggagccaagagcctggcacaagtgcttccg
gacatggtgtccctgcgagtgatggatgtccagttcaacaagttcacggctgccggtgcc
cagcagctggcctccagccttcagaagtgccctcaagtggaaacgctggcaatgtggaca
cctactatcccctttggggttcaggaacacttgcagcagctggattcccggatcagccta
agatga
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