Chionomys nivalis (European snow vole): 130878537
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Entry
130878537 CDS
T11437
Symbol
Ddx1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
cnl Chionomys nivalis (European snow vole)
Brite
KEGG Orthology (KO) [BR:
cnl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cnl03041
]
130878537 (Ddx1)
03016 Transfer RNA biogenesis [BR:
cnl03016
]
130878537 (Ddx1)
Enzymes [BR:
cnl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130878537 (Ddx1)
Spliceosome [BR:
cnl03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
130878537 (Ddx1)
Transfer RNA biogenesis [BR:
cnl03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
130878537 (Ddx1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
DUF5766
Paramyxo_PNT
Motif
Other DBs
NCBI-GeneID:
130878537
NCBI-ProteinID:
XP_057632538
LinkDB
All DBs
Position
1:complement(98807824..98835348)
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AA seq
740 aa
AA seq
DB search
MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH
GCRATRGLLKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD
NYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPAHIKNQALFPACVLKNAELKF
NFGEEEFKFPPKDGFVAISKAPDSYIVKSQHTGNAQVSQTKFLPNAPKALIVEPSRELAE
QTLNNVKQFKKYIDNPKLRELLIIGGVAARDQLSVLDNGVDIVVGTPGRLDDLVSTGKLN
LSQVRFLVLDEADGLLSQGYSDFINRMHSQIPQITSDGKRLQVIVCSATLHSFDVKKLSE
KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDKLWERLGKNHIRTDDVHAKDNTRPGAN
SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFMQQGGGPDKKGHQF
SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV
HRIGRVGRAERMGLAISLVATEKEKVWYHVCSNRGKGCYNTRLKEDGGCTIWYNEMQLLS
EIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGNYKGHVDILAPTVQELAALEK
EAQTSFLHLGYLPNQLFRTF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcggccttctccgagatgggtgttatgcctgagattgcacaagctgtggaagaaatg
gattggcttctaccaactgatatccaggcagaatctatcccattgatcctaggaggagga
gatgtccttatggcagcagaaacaggaagtggaaagactggtgcctttagtattccagtt
atccagatagtgtatgagactctgaaagaccaacaggaaggaaagaaaggaaaaactact
attaaaaccggtgcttcagtgctcaacaaatggcagatgaacccatatgacagaggatct
gcttttgctattgggtcagatggcctgtgttgtcagagcagagaagtgaaggagtggcat
gggtgcagagcgaccagaggactgctgaaagggaaacactactacgaggtatcctgtcat
gaccaaggcctgtgcagagttgggtggtctaccatgcaggcctcgttagacctaggtact
gacaagtttggatttggcttcggtggaacaggaaagaaatctcataataaacagtttgat
aattacggagaggaattcactatgcatgatactattgggtgctacttagatattgataaa
gggcatgtgaagttctctaagaatggaaaagaccttggtctagcatttgaaataccagca
catataaaaaatcaagcgctcttccccgcctgtgttttaaagaatgctgaattgaaattt
aactttggtgaagaagaatttaagtttccaccaaaagatggttttgttgctatttccaag
gctcccgatagttatattgtcaagtcgcagcacacaggtaatgcacaggtttcacaaaca
aaatttctccctaatgctccaaaagctctcattgtggaaccctcccgggagttagcagag
caaaccctgaacaacgtcaagcagtttaagaagtatattgataaccctaagttacgggaa
ctgctcataattgggggagtggcggctcgggatcagctctcagttttggataatggggtt
gatattgtcgtcggtactccgggaagattagatgatttggtatcaacgggaaagctcaac
ttgtctcaagttagattcttggttctggatgaagcagatgggcttctctctcaaggttac
tctgacttcattaacaggatgcacagtcagattcctcagattacttctgatgggaaaaga
ctccaggtgattgtttgctctgctactttgcattctttcgatgtaaagaaactatctgag
aagataatgcattttcccacatgggttgatttgaaaggggaagattctgttccagatact
gtgcaccatgtagttgtccctgtaaatccgaaaactgacaagctctgggaaaggctgggc
aagaaccacattcgaactgatgatgtacatgcaaaagataacacaagacctggtgctaac
agtccagagatgtggtctgaagctattaaaatacttaagggggagtatgctgtccgagca
atcaaggaacacaagatggatcaagcaattatcttctgtagaactaaaattgactgtgat
aacttggagcagtactttatgcaacaaggaggaggacctgataaaaaaggacaccagttc
tcatgtgtatgtcttcacggtgacagaaagcctcatgagagaaagcagaacttggaaaga
tttaagaaaggagacgtaagatttttgatttgcacagatgtagctgctagaggcattgac
atccatggtgttccttatgttataaatgtcaccctgcctgatgaaaaacagaactatgtg
caccggattggcagagtagggcgagctgaaagaatgggcctggccatttccctggtagca
acagagaaagaaaaggtttggtatcatgtatgcagcaaccgtgggaaaggatgctataac
acgaggctcaaggaagatggtggctgtaccatctggtacaatgaaatgcagctactttcc
gagatagaagaacacctgaactgcactatttcccaggttgagccagatataaaggttcca
gtggatgagtttgatgggaaagttacctacggtcaaaagagggctgctggcggtggaaac
tataaaggccatgtggatatcctggcacctactgttcaggagttggctgcccttgaaaag
gaagcacagacatctttcctgcaccttggctaccttcccaaccagctgttcagaaccttc
tga
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