Chionomys nivalis (European snow vole): 130879399
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Entry
130879399 CDS
T11437
Symbol
Col17a1
Name
(RefSeq) collagen alpha-1(XVII) chain isoform X1
KO
K07603
collagen type XVII alpha
Organism
cnl Chionomys nivalis (European snow vole)
Pathway
cnl04382
Cornified envelope formation
cnl04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
cnl00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
130879399 (Col17a1)
09158 Development and regeneration
04382 Cornified envelope formation
130879399 (Col17a1)
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Gene cluster
GFIT
Motif
Pfam:
Collagen
DUF2868
Motif
Other DBs
NCBI-GeneID:
130879399
NCBI-ProteinID:
XP_057633870
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Position
8:12875299..12914779
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AA seq
1469 aa
AA seq
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MDVTKKNKREGTEVTERLITETVTTRLTSLPPKGSTSNGYAKTGSLGGGSRLEKQSLTHG
SSGYINSSGSIRGNASTSSYRRAHSPASTLPNSPGSTFERKTHMTRHGTYEGSSSGNSSP
EYPRKELASSATRGRSQTRESEIRVRLQSASPSTRWTELDEVKRLLKGSRSASASPTRNT
SNTLPIPKKGTVETKTVTASSHSVSGTYDATALGTNLPSHMWSSTLPAGSSMGTYHNNMT
AQSSSLLNTNAYSAGSVFGVPNNMASCSPTLLPGLSSCSSVFGMQNNLAPSSSVLAHGTT
TTSTAYGVKKNVPQPPTVTSTGVSTSATCTTSVQSDDLLHKDCKFLILEKDNVPAKKEME
LLIMTKDSGKVFTASPASISSTSFSEDTLKKEKQAAYVADTCLKADINGDLNAASTKSKV
TSVENHSYDRGGGGGGGKGGGGGAIHGGGGGGGGGAGGGGTWGAAPAWCPCGSCCSWWKW
LLGLLLTWLLLLGLLFGLIALAEEVRKLKARVDELEKIRVQYSEDKVERSSKDRLLSEAP
GLGPGLGKAELDGRSQEVIWLFVRDKLMKEQENGNLRGNPGPKGDMGSQGPKGDRGLPGL
PGISGPLGHPGPEGPKGQKGSIGDPGMEGPIGQRGLEGPMGPRGEPGPPGSGEKGDRGIA
GEQGPRGLPGVPGSVGPRGPNGSPGPQGPPGSVGPQGLRGEVGLPGVKGDKGLMGPPGTK
GDQGEKGPRGLTGEPGMRGLPGAVGEPGAKGAMGPSGPDGQQGPRGEQGLTGMPGTRGPP
GPSGDPGKPGLTGPQGPQGLPGSPGRPGTKGEPGAPGRVMTAEGSSTITVPGPPGPPGAM
GPPGPPGTPGPAGPAGLPGQQGPRGEPGLAGDSFISSGSSISEVLSAQGVDLRGPPGPPG
PRGPPGPSIPGPPGPRGPPGEGVPGPPGPPGSFLADSETLFSGRPGPPGPPGPKGDQGDP
GVPGTPGIPGGHSHGGSSSTTYMQGPPGPPGPPGPPGSLRSSGQDIQHYIAEYMQSDSIR
SYLSGVQGPPGPPGPPGPAITVTGETFDYSQLASQVVSYLRTSGYGVSLSSASSEEILAM
LRRNDVWQFLRQHLAGPPGPPGPPGVRGDGSLLSLDYGELSRHILNYMSSSGISFGHPGP
PGPPGLPGTSYEELLTMLRGSDYRDIIGPPGPPGPPGMPGSAWSSISVEDLSSYLHTAGL
SSIAGPPGPPGPPGPRGPPGVSAALATYAAENSDNFRSELINYLTSPDVRSFIVGPPGPP
GPQGPPGNGHLRENYSWGSSSSDRRGTSYSSSTGGSLGEGGAFGAGDGGPYGTDIGPGGG
YGAAAGGLYGTNGDSLRAGFTGDLDYNKLAVRVSESMQRQGLLQGMAYTVQGPPGVPGPQ
GPPGISKVFSAYSNVTQDLMDFFRTYGAIPGPPGQKGEAGAPGPKGDRGLAGQRGPPGPP
GPRGQKGEKGDKGDQVYTGRRRRSIAVKP
NT seq
4410 nt
NT seq
+upstream
nt +downstream
nt
atggatgtgaccaagaaaaacaagcgcgaaggcactgaagtcactgaaagacttatcacg
gaaacagtaactacaagactcacatctttaccaccaaaagggagcaccagcaatggatac
gctaagactggctctctcggtggaggaagtcggctagagaaacaaagtctgactcacggc
agcagcggctacatcaactcaagcgggagcatccggggcaacgcttccacctccagctac
aggagagctcactcgcccgcctctaccctgcccaactctcccggctccacctttgagagg
aaaactcacatgacccgccatggaacttacgaaggtagctccagcggcaactcctcccct
gagtacccacggaaggaacttgcatcttctgcaaccagaggacgaagccaaacgcgagag
agtgaaattcgggttcgactgcagagtgcatcgccatccaccagatggacagaactggat
gaagtcaagcgtttgcttaaggggagccgatctgcaagcgcaagtcccaccaggaacacc
tccaacacgctccccatccccaagaaaggcaccgtagagaccaaaacagtgactgcgagc
tcccactcagtatcaggaacctatgacgcgacagcactgggcaccaacctcccctcccac
atgtggtcgtccaccttgcccgcagggtcctccatggggacctatcacaacaacatgaca
gcccagagctcctcccttctcaacaccaacgcctactcagcaggatcggtctttggagtg
ccgaataacatggcatcatgctcccccaccctgctccccggactcagcagctgctcctca
gtgtttggcatgcagaacaatctggcccccagctcttctgtcctagcccacggcacaacc
accacttccacagcgtatggtgtgaagaaaaacgtaccgcagccccccacggtcaccagc
accggtgtgtccacctctgctacctgcaccaccagtgtccagagtgatgacctcctgcat
aaagactgcaagttcctgattctggagaaagacaatgtacctgccaagaaggagatggag
ctcttgatcatgaccaaggacagtgggaaggtcttcactgcctcccctgccagcatctct
tcaacttctttttcagaggacaccctgaaaaaagaaaagcaagctgcatatgtggctgac
acctgcctaaaggcagatataaatggagacctaaatgctgcatccacaaagagcaaggtc
acctcagtagaaaaccacagctatgaccgaggtggcggtggtggtggaggcaaaggcggc
ggtggaggcgccatacatggtggtggtggtggcggcggtggtggcgccggtggcggagga
acatggggggctgcgcctgcctggtgcccctgtggctcctgctgcagctggtggaagtgg
ctgctgggcctgctgcttacctggctgctgttgctgggtctgctcttcggcctcatcgct
ctggcggaggaggtgaggaagctcaaagcccgggtggatgagctggagaagatcagggtg
caatattctgaagacaaggtggagagaagtagcaaggaccgccttctgagtgaggcgcct
ggcctgggacctgggttaggcaaagctgagctggatggccgcagccaggaggtgatctgg
ctcttcgtgagggacaagctgatgaaagaacaggaaaacggaaatctcagaggaaatccc
ggtccaaaaggtgacatgggaagtcaaggccctaaaggagaccgaggcctccctgggttg
ccaggtatttctgggcccctaggccacccaggcccagaaggaccaaagggacaaaagggc
agcattggagatcctggcatggaaggacccataggccagagaggactagaaggccccatg
ggacctcgtggtgaacctgggcctccagggtctggagagaaaggggaccgaggaattgct
ggagaacaaggccctcggggccttccgggtgtcccaggttctgtgggtcccagaggtccc
aatggctctcctggtccccagggacccccaggctctgtgggtccccaaggactccgaggt
gaagtgggactccctggtgtcaaaggtgacaaaggacttatgggaccaccaggcaccaaa
ggtgaccagggtgagaaaggacccagaggcctcacaggggaacctggcatgcgaggtttg
cctggagccgtgggtgagcccggagccaaaggcgcaatgggtccttctggccctgatgga
cagcaaggccccagaggtgagcaaggcctgacagggatgcctgggacccgaggcccacca
ggaccctctggagacccaggaaagccaggtctcacaggaccccaaggaccccagggactt
cctggtagccctggccgaccggggactaaaggtgaacccggcgctccaggcagagtcatg
actgcagagggctcatcaacaatcactgtccctggacctcccggacctcccggtgccatg
ggacccccaggacctccagggactccaggtcccgctggccctgctggtctcccaggacaa
caaggcccacgaggggagccaggacttgctggtgactcattcataagcagtggtagctcc
atctccgaggtcctctctgcccaaggtgttgacttacggggtccccccggtccacctggc
ccacgagggccaccagggccttccatcccaggcccaccaggacccagaggccctccgggg
gaaggtgtgccaggcccaccgggaccaccaggatctttcctggctgattcagaaaccctc
ttctctggccgtccgggtccacctggccccccgggtcccaagggagaccaaggtgatcct
ggtgtcccaggtactcctggcatccctggtggtcactctcatggtggatcatccagtact
acgtacatgcagggcccgcctgggcctcctgggccccctgggcctccaggctccctccgt
agctctggccaggacatccagcactacatcgcagagtacatgcagagtgacagcatcagg
tcttatctctctggagttcagggtcctccaggcccaccagggcctccagggcctgccatc
accgtcacaggagagactttcgactactcccagctggcaagccaggtggtgagctacttg
cgaacgtctggctatggagtcagcttgtcctctgcctcctccgaagagatcctggccatg
ctgcgacggaatgatgtgtggcagttcctacgtcagcacctggcgggtcccccgggtccc
cccgggccaccaggagtccgcggagatgggtccctcctgtccttggactatggagaactt
agcagacacattctcaactatatgtcaagttctggaatcagttttgggcatcctggccca
ccaggtccccctggccttccagggacatcctatgaggagctactcaccatgctccgaggg
tctgactatagggacatcattgggcctccaggaccacccgggccaccagggatgccaggc
agcgcgtggtccagcatcagcgtggaggacctctcatcctacttgcacactgctggcttg
tcctccatcgcaggccctccaggccctcctggacccccaggtcctcgagggcccccaggt
gtctcagcagctctggctacctatgcagctgaaaacagcgataacttccgcagcgagctg
attaactacctcacaagtcctgatgtccgtagcttcatcgttggccctccaggccctcca
ggcccccagggaccacctggaaatggtcacttaagagagaactacagctggggtagcagc
tcctctgacagacgaggcacttcctacagctcttccacaggaggctccctgggtgaaggc
ggagcctttggtgcaggagatgggggtccctatggtactgatatcggaccaggcggaggt
tatggggcagctgcaggtggcttatatggcaccaatggcgattcgctccgggctggcttc
actggagacctggattataacaagctggcagtgcgggtgtcggagagcatgcagcgtcaa
ggcctgctacaagggatggcctacactgtccagggcccaccaggcgtgcctgggccccag
ggccctcctggcatcagcaaggtcttctctgcctacagcaatgtgacacaggacctcatg
gacttcttccggacttatggagctattccaggcccacctgggcaaaagggagaggcgggc
gccccaggacccaaaggtgacaggggccttgctggacaacgaggtcctcctgggccacct
ggccctcgagggcaaaaaggagagaaaggagacaagggcgaccaagtctacactgggagg
aggaggagaagtattgccgtcaagccataa
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