Chionomys nivalis (European snow vole): 130881234
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Entry
130881234 CDS
T11437
Symbol
Vps16
Name
(RefSeq) vacuolar protein sorting-associated protein 16 homolog isoform X1
KO
K20180
vacuolar protein sorting-associated protein 16
Organism
cnl Chionomys nivalis (European snow vole)
Pathway
cnl04140
Autophagy - animal
cnl04148
Efferocytosis
cnl05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
cnl00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
130881234 (Vps16)
04148 Efferocytosis
130881234 (Vps16)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
130881234 (Vps16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cnl04131
]
130881234 (Vps16)
Membrane trafficking [BR:
cnl04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
130881234 (Vps16)
Hops complex
130881234 (Vps16)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps16_N
Vps16_C
Motif
Other DBs
NCBI-GeneID:
130881234
NCBI-ProteinID:
XP_057636654
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Position
9:complement(44569421..44592142)
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AA seq
839 aa
AA seq
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MDCYTANWNPLGDSAFYRKYELYSMDWDLKEELKDCLVAAAPYGGPIALLRNCWRKEKAA
SVRPVLEIYSASGMPLASLLWKSGPVVALGWSAEEELLCVQEDGAVLVYGLHGDFRRHFS
MGNEVLQNRVLDARIFHTEFGSGVAILTGAYRFTLSANVGDLKLRRMPEVPSLQSAPSCW
TTLCHDRVAHILLAVGPDLYLLDHATCSTVTPAGLAPGVSSFLQMAVSFTYRYLALFTDT
GYIWMGTASLKEKLCEFNCNIRAPPKQMVWCSRPRSKERAVVVAWERRLMVVGNAPESIQ
FVLDEDSYLVPELDGVRIFSRSTHEFLHEVPVASEEIFKIASMAPGALLLEAQKEYEKES
QKADEYLREIQELGQLIQAVQQCIEAAGHEHQPDMQKSLLRAASFGKCFLDRFPPDSFVR
MCQDLRVLNAIRDYHIGIPLTYSQYKQLTIQVLLDRLVLRRLYPLAIQICEYLRLPEVQG
VSRILAHWACYKVQQKDVSDEDVARAINQKLGDTPGVSYSDIAARAYGCGRTELAIKLLE
YEPRSGEQVPLLLKMKRSKLALSKAIESGDTDLVFTVLLHLKNELNRGDFFMTLRNQPMA
LSLYRQFCKHQELDTLKDLYNQDDNHQELGSFHIRASYAAEERIEGRVAALQTAADAFYK
AKNEFAAKATEDQMRLLRLQRRLEDELGGQFLDLSLHDTVATLIRGGHNKRAEQLARDFR
IPDKRLWWLKLAALADLEDWEELEKFSKSKKSPIGYLPFVEICMKQHNKYEAKKYASRVG
PEQKVKALLLVGDVAQAADVAIEHRNETELSLVLSHCTGAADGATADKIQRARAQVQKK
NT seq
2520 nt
NT seq
+upstream
nt +downstream
nt
atggactgttacacagcgaattggaacccactcggggactctgccttttaccggaaatat
gaactgtacagcatggactgggacctgaaggaggaactcaaggattgcttggtggctgct
gctccctatggaggtcccattgctctgctacggaactgttggagaaaagagaaagctgcc
agcgtgcggccagtactggagatctactctgcctctggcatgccactggccagcctgctg
tggaagagcgggcctgtggtggcccttggctggtcagcggaggaagagctgctctgtgta
caagaagatggcgcagtgttagtttacgggcttcatggagacttccggaggcacttcagc
atgggcaacgaggtgcttcagaaccgagtcctggatgcccggatctttcatactgagttt
ggttctggggtggccatcctcacgggggcctatcgctttaccctgagtgccaatgtgggt
gacctcaaactccgtcggatgccagaggtgccaagtctacaaagtgcaccctcatgttgg
accacactgtgccacgaccgagtggcacacattcttctggctgtagggcctgatctttac
ctcctggatcatgccacctgctccacagtgacacctgctggcctagccccaggagtgagc
agcttcctacagatggctgtatctttcacatatcgttacctggcactcttcacagacacg
ggctacatctggatggggacagcgtcactcaaggagaagctgtgcgagttcaactgcaac
atccgggcacccccaaagcagatggtctggtgtagccgtcctcgaagcaaggaaagggct
gttgtggtggcctgggagagacggctaatggtggtgggcaatgcgcctgaaagcattcag
tttgtgctagatgaggactcctacttagtgccggagcttgatggggtccgcatcttctcc
cgcagcacccatgaattcctacatgaagtcccagtggccagtgaagagatcttcaaaatt
gcctcaatggcccctggagcactactgttggaggctcagaaggaatatgagaaagagagc
cagaaagcagatgagtacctacgggagatccaggagctggggcagctcatccaggctgtg
cagcagtgcattgaagctgcaggacatgagcaccagccagacatgcaaaagagtctgctc
agggcagcttcctttggaaagtgtttccttgacagatttccacctgacagttttgtgcgc
atgtgtcaggacctgcgagtgctcaatgctattagggactaccacattgggatccctctg
acctatagccaatataagcagcttaccatccaggtgctgttggacaggcttgtattgcgg
aggctttaccccctagctattcagatatgcgagtacctgcgccttcctgaagtacagggt
gtcagcaggatcctagcccactgggcctgctacaaggtgcagcagaaagatgtctcagat
gaggatgtagcacgggcaattaatcagaagctgggcgacacgcctggtgtttcatattct
gacattgctgcacgagcctatggctgtggccgcactgaactagccatcaagctactggag
tatgagccacgatcaggggagcaggtacctcttctcctaaagatgaagaggagcaaacta
gcactgagcaaggccattgagagtggggacactgacctggtgtttacagtgttgctgcac
ctaaagaatgaactaaatcgaggagactttttcatgactctccggaaccaacccatggcc
ctgagtttgtatcgacagttctgtaagcatcaggagctagacactctgaaggacctttac
aatcaagacgacaatcaccaggagttgggcagcttccacatccgagccagctatgctgct
gaagagagaattgaggggcgagtagcagctctgcagacagcagctgatgccttctacaag
gccaagaatgaatttgcagccaaggccacagaggatcaaatgaggctcctccggctacag
cggcgtctagaagatgaactggggggccagttcctagacctgtctctgcatgacacagtt
gccactcttatccgtggcggccacaacaagcgtgcagagcagctggctcgtgattttcga
atccctgacaagaggctctggtggctaaagctggctgccctggcagatttggaagattgg
gaggaactggagaagttttccaagagcaagaaatcaccgattggctacctgccctttgta
gagatctgcatgaaacagcacaacaagtatgaggccaagaagtacgcgtcccgtgtgggc
cctgagcagaaggtcaaggctctgctccttgttggggacgtggctcaggctgcagatgtg
gctattgagcaccggaatgaaaccgagctgagcctggttttgtcccactgcaccggagct
gcagatggggccacagctgacaagattcagcgggccagagcacaagtccagaagaagtga
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