Chionomys nivalis (European snow vole): 130881976
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Entry
130881976 CDS
T11437
Symbol
Vps18
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
cnl Chionomys nivalis (European snow vole)
Pathway
cnl04140
Autophagy - animal
cnl04148
Efferocytosis
cnl05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
cnl00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
130881976 (Vps18)
04148 Efferocytosis
130881976 (Vps18)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
130881976 (Vps18)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cnl04131
]
130881976 (Vps18)
Membrane trafficking [BR:
cnl04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
130881976 (Vps18)
Hops complex
130881976 (Vps18)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pep3_Vps18
VPS18_RING_C
Clathrin
zf-RING_5
zf-C3HC4_2
zf-RING_Vps41
zf-RING_16
KNOX2
zf-ANAPC11
zf-RING_2
zf-RING_UBOX
zf-rbx1
zf_RING_Vps8
WD40_Prp19
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
130881976
NCBI-ProteinID:
XP_057637826
LinkDB
All DBs
Position
9:complement(55419369..55429905)
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AA seq
973 aa
AA seq
DB search
MASILDEYEDSLSRSAVLQTGCPTVGIPHSGYVNAQLEKEAPIFTKQRIDFTPAERITSL
VVSCNQLCMSLGKDTLLRIDLGKASEPNRVELGRKDDAKVHKMFLDHTGSHLLVALSSTE
VLYMNRNGQKVRPLARWKGQLVESVGWNKALGNESSTGPILVGTAQGQIFEAELSASEGG
LFGPAPDLYFRPLYVLNEEGGPAPVCSLEAERGPDGRGFVIATTRQRLFQFISRAVDDAE
AQGFSGLFAAYTDHPPPFREFPSNLGYSELAFYTPKLRSAPRAFAWMMGDGVLYGSLDCG
RPDSLLSEERVWEYPAGVGPGASPPLAIVLTQFHFLLLLADRVEAVCTLTGQVVLRDHFL
EKFGPLRHMVKDSSTGHLWAYTERAVFRYHVQREARDVWRTYLDMNRFDLAKEYCRERPD
CLDTVLAREADFCFRQHRYLESARCYALTQSYFEEIALKFLEARQEEALAEFLQRKLAGL
KPTERTQATLLTTWLTELYLSRLGALQGDPDALNLYRDTRECFRTFLSSPRHKEWLFASR
ASIHELLASHGDSEHMVYFAVIMQDYERVVAYHCQHEAYEEALAVLAGHRDPQLFYKFSP
ILIRHIPRQLVDAWIEMGSRLDARQLIPALVNYSQGGEAQQVSQAIRYMEFCVNVLGETE
QAIHNYLLSLYARGQPASLLAYLEQAGASPHRVHYDLKYALRLCAEHGHHRACVHVYKVL
ELYEEAVDLALQVDVDLAKQCADLPEEDEELRKKLWLKIARHVVQEEEDVQTAMACLASC
PLLKIEDVLPFFPDFVTIDHFKEAICSSLKAYNHHIQELQREMEEATASAQRIRRDLQEL
RGRYGTVEPQDKCSTCDFPLLNRPFYLFLCGHMFHADCLLQAVRPGLPAYKQAKLEELQR
KLGAAPPPTKGSAKAKEAEAGASAGGPSREQLKADLDELVAAECVYCGELMIRSIDRPFI
DPQHYEEEHRSWL
NT seq
2922 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccatcctggatgagtatgaggactcactgtcccgctcagccgtcttgcagact
ggttgccctaccgtgggcatcccccattctgggtatgtaaacgcgcagctggagaaggaa
gcgcccatcttcacgaagcagcgcattgacttcactccagcagagcgcatcaccagcctt
gtggtctcctgtaatcagctctgcatgagcctgggcaaggatacgctgctccgcattgac
ctgggcaaggcaagtgaacccaaccgtgtggaactggggcgcaaggatgatgccaaagtt
cacaagatgttcctggaccacactggctctcacctgctggttgctctgagcagcaccgag
gtcctctatatgaaccggaacgggcagaaggtccggccattggcacgctggaagggacag
ttggtggagagtgtgggctggaacaaagccctgggcaacgagagcagcactgggcccatc
ctggtcggcacagcccaaggacagatctttgaagcagagctctctgctagcgaaggtggc
ctttttggccccgcccctgatctctacttccggccactgtatgtgttaaatgaagaaggg
ggtcctgcacccgtgtgctcccttgaggctgagcgtggccctgatgggcgaggctttgtc
atcgccaccacccggcagcgtctcttccagttcataagccgcgcggtagacgatgctgaa
gcccagggcttctcaggcctctttgctgcctatacggaccacccgcccccattccgtgag
tttcctagcaatttggggtatagtgagttggctttctatacccccaagttacgctctgcg
cctcgtgccttcgcctggatgatgggagacggtgtgctgtatggctccctggactgcggg
cgtcctgattcgctgctgagcgaggagcgcgtgtgggaatatccagcgggggtcgggcct
ggggccagtccacccctagccatcgtcttgacccagtttcattttctgctgctgctggca
gaccgggtggaggctgtgtgtaccctgacagggcaggtggtacttcgggatcacttcctg
gagaagtttggaccactgaggcacatggtgaaggactcgtccacaggtcacctctgggcc
tacaccgagcgtgcggtcttccggtaccacgtgcagcgcgaagctagggatgtctggcgc
acgtacctggacatgaaccgttttgacctggccaaagagtattgtcgagagcggccagac
tgcctggacacagtcctggcccgagaggccgatttctgcttccgccagcaccgctatctg
gagagcgcccgctgttacgctctaacccagagctacttcgaggagattgccctcaagttt
ttggaggcccggcaagaagaggcactggccgagtttctacagcggaaactggccggcctg
aagccaacggagcgtacccaggccacactgctaaccacttggctgacggagctctacctg
agccggcttggtgccctgcagggtgacccggatgctctgaatctctaccgggatacccgg
gaatgcttccgcacctttctcagtagccctcggcacaaggagtggctctttgcgagccgg
gcctctatccacgagctgctcgccagtcatggggactcagagcatatggtgtacttcgcg
gtgatcatgcaggactatgaacgagtggtggcctaccactgccagcacgaggcctatgag
gaggccctggctgtccttgccggccaccgtgacccccagctcttctacaaattctcaccc
atcctcatccggcatatcccccgccagctagtggatgcctggattgagatgggcagccgc
ctggacgcccggcagctcatccctgccctggtgaactatagccagggtggtgaggctcag
caggtgagccaggccatccgctatatggaattctgtgtgaatgtcctcggcgagactgag
caagccattcacaactacctgctgtcgctgtatgcacgtggccagccagcctcgctgctg
gcctacctggagcaagctggggccagcccgcaccgtgtgcattatgacctcaagtacgca
cttcgactctgtgccgagcatggtcaccaccgcgcttgtgttcacgtctataaggtgctg
gagctgtatgaagaagctgtggacctggccctgcaggtggatgtggacctggccaagcag
tgcgcagacctgcccgaggaggacgaggagctgcgcaagaagctgtggctgaagattgcc
cggcacgtggtgcaggaggaggaggatgtgcagaccgccatggcctgcttggccagctgc
cccctgctcaagatcgaggacgtgctgcccttcttccccgacttcgtcaccatcgaccac
ttcaaggaggccatctgtagttccctgaaggcctacaaccaccacatccaggagctgcag
cgggagatggaggaggccacggccagtgcccagcggatccgccgagacttgcaggagctg
cggggacgctatggcactgtggagcctcaggacaagtgctccacgtgtgacttccctctg
ctcaaccgacccttttacttgttcctctgtggccacatgtttcacgccgactgtctcctg
caggctgtgaggcctggccttcctgcttacaagcaggccaagcttgaggagctgcagcgc
aagcttggggctgcccctcctcccaccaaaggctcagccaaggccaaagaggccgaagct
ggggcttcagccggggggcccagccgggagcagctcaaggctgacctagacgaactggtg
gctgctgagtgtgtgtactgtggggagctgatgattcgttccattgaccggcccttcatt
gacccccagcactatgaggaggaacaccgcagctggctgtag
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