Chionomys nivalis (European snow vole): 130887238
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Entry
130887238 CDS
T11437
Symbol
Mtrex
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cnl Chionomys nivalis (European snow vole)
Pathway
cnl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cnl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130887238 (Mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cnl03019
]
130887238 (Mtrex)
03041 Spliceosome [BR:
cnl03041
]
130887238 (Mtrex)
03009 Ribosome biogenesis [BR:
cnl03009
]
130887238 (Mtrex)
03016 Transfer RNA biogenesis [BR:
cnl03016
]
130887238 (Mtrex)
Enzymes [BR:
cnl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
130887238 (Mtrex)
Messenger RNA biogenesis [BR:
cnl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
130887238 (Mtrex)
Spliceosome [BR:
cnl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
130887238 (Mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
130887238 (Mtrex)
Ribosome biogenesis [BR:
cnl03009
]
Eukaryotic type
Pre-60S particles
Helicases
130887238 (Mtrex)
Transfer RNA biogenesis [BR:
cnl03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
130887238 (Mtrex)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
130887238
NCBI-ProteinID:
XP_057645521
LinkDB
All DBs
Position
15:33764981..33831704
Genome browser
AA seq
1042 aa
AA seq
DB search
MADAFGDELFSVFEDDSTTAAGAKKDKEKEKEKWKGPPGATDKAGKRLDAKLQSESASGV
KNKRDADVEGTDEPIFGKKPRIDDSINEDLSLADLMPRVKVQSVETVEGCTHEVALPADE
EYIPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALR
EKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGS
EVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLH
KQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGD
QKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMV
EEVFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALF
ATETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVD
EKMSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPG
VVEKVKNSEEQYNKIVIPNEENVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLV
KVKNEGDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLRCSKESLKNSATEAAKPAKP
DEKGEMQVVPVLVHLLSAISTVRLYIPKDLRPVDNRQSVLKSIQEVQKRFPDGVPLLDPI
DDMGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELK
KARTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDL
SAEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEDTYLS
SFKPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELE
NKFAEGITKIKRDIVFAASLYL
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgctttcggagacgagcttttcagcgttttcgaggatgattcgaccactgcg
gccggagccaagaaagacaaagaaaaggagaaggagaaatggaaggggccaccaggggcc
acggacaaggccgggaaacgactggatgccaagttacagtcagaatcagccagtggtgtt
aaaaacaagagagatgcagatgttgaaggcacagatgaaccaatttttggcaagaaaccc
agaatagacgattcaattaatgaagacttaagtttggcagacctgatgccgagagtgaag
gtacaatcagttgaaacagttgaaggttgtacacatgaggttgctcttcctgcagatgaa
gaatatataccacttaaacctcgagttggaaaggctgcaaaggaatacccattcattctt
gatgctttccaaagagaagccattcagtgtgtcgataataatcagtctgtgttagtgtct
gctcatacatcagcaggaaaaactgtgtgtgctgagtatgcaattgcattggctttaagg
gaaaagcagcgtgtaatatttaccagcccaattaaggctcttagtaaccagaaataccgt
gaaatgtatgaagagtttcaagacgtcggtctgatgactggagatgtcactattaatcct
acagcatcttgtcttgttatgactacagagattttgagaagtatgctgtatagaggttct
gaagttatgcgagaagttgcttgggtcatatttgatgaaattcattacatgagagattca
gagcgtggtgtagtatgggaagaaactattattttgcttccagataatgtccattatgtc
tttctttctgctactatcccgaatgctcgacagtttgctgaatggatttgccacctacat
aaacagccctgtcatgtaatttatactgattatcgacctactccattgcaacattatata
tttccagcagggggagatggccttcaccttgtggtcgacgaaaatggtgacttcagagaa
gataattttaatactgcaatgcaagtgcttcgggatgcaggtgatttggccaaaggagat
cagaagggacggaaaggaggaacaaaaggtccatcaaatgtgttcaagattgtgaagatg
attatggaaagaaattttcaacctgtaattatcttcagttttagtaagaaagattgtgaa
gcatatgctcttcaaatgactaaattagatttcaacacagatgaagaaaagaagatggtt
gaagaagtattcagtaatgcaattgactgcttgtctgatgaagataaaaagctccctcag
gttgagcatgtacttcctcttttgaagcgggggattggtattcaccatggtggtttactt
cctattttgaaggaaactatagaaattctcttttctgaaggattgataaaggccttattt
gccacagagacttttgctatgggaattaatatgccagctagaaccgttttatttacaaat
gcccgtaaatttgatgggaaggattttagatggatttcctctggtgagtacatccagatg
tctggccgtgctggaaggaggggaatggatgacagaggaattgtaattcttatggtagat
gaaaagatgagcccaacaattggaaaacaactacttaagggctcagctgatcctctgaat
agtgctttccatctgacctataacatggttttgaacttattacgagtagaagaaattaat
cctgagtacatgctggaaaaatccttctaccagttccagcattatagagcaatcccagga
gtagtagagaaggtcaagaactcagaagagcagtataataaaatagtgatccccaatgaa
gaaaatgtggttatctattataagattagacagcaacttgccaaactgggaaaagagatt
gaagaatatattcataagccaaaatactgcttaccatttctacagccaggtcgcttggta
aaggtgaaaaatgaaggagatgattttggctggggtgtagtagtgaatttctcaaaaaag
tcaaacgttaagcctaactctggagaactggaccctttgtatgtggtagaagtgctgctg
cgctgcagcaaagagagcctgaaaaattctgcaaccgaggcagcaaagccagcaaaacct
gacgagaaaggagagatgcaggttgtccctgttttggtacatctcttgtctgccatcagc
actgttaggctttacatcccgaaagaccttcggcctgtggacaacagacagagtgtttta
aagtccatacaggaagttcagaagcgttttcctgatggtgttcctttgttagatcctatt
gatgatatgggcattcaagatcaaggactaaaaaaagtcattcagaaagtagaggctttt
gagcatcgaatgtattctcatccacttcacaatgatccaaatttggaaactgtgtataca
ctttgtgagaaaaaagcacagattgcaatagacattaaatctgcaaagcgagaattgaag
aaagcaagaaccgtcctgcaaatggatgaactcaaatgtcgcaaacgtgttttaaggagg
ttgggctttgctacgtcttctgacgtaatagagatgaaaggacgtgtggcttgtgaaata
agcagtgctgatgaactccttctaacagagatgatgtttaatggacttttcaatgacctt
tctgcagaacaggcaactgcactattgagctgttttgtgtttcaagagaattctagtgag
atgcccaaactaacagaacagttggctggaccacttcgacaaatgcaggaatgtgctaaa
aggattgcaaaggtttcagcagaagcaaaactggagattgatgaagacacttacctaagc
tcgttcaagcctcacctgatggatgtggtgtatacctgggcaactggagccacatttgct
catatctgcaaaatgacagatgtctttgaaggcagcataattcgttgtatgaggcgcctg
gaagaactgcttcgacagatgtgtcaagcagcaaaagccattggaaacacggagctggag
aacaaatttgctgaaggaatcaccaaaatcaagagggatattgtattcgctgccagcctg
tacttatag
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