Chionomys nivalis (European snow vole): 130888556
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Entry
130888556 CDS
T11437
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG5-like
KO
K11125
protein SMG5
Organism
cnl Chionomys nivalis (European snow vole)
Pathway
cnl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cnl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
130888556
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cnl03019
]
130888556
03032 DNA replication proteins [BR:
cnl03032
]
130888556
Messenger RNA biogenesis [BR:
cnl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
130888556
mRNA cycle factors
Common to processing body (P body) and stress granule
130888556
DNA replication proteins [BR:
cnl03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
130888556
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
DUF4689
Motif
Other DBs
NCBI-GeneID:
130888556
NCBI-ProteinID:
XP_057647597
LinkDB
All DBs
Position
17:9314532..9404595
Genome browser
AA seq
977 aa
AA seq
DB search
MERSHEETPKARLLYQEVCLAAQRLDFFLQKGNAHKEVFKPHILALREMVQQACIKLMFL
HPVVYGRKAEELLWRKIYSDVIMLLMKTNKKQMDTFQHWGGPLQAHLKAGLRFYEHLFLF
LQGHYELRLQSYIDWPHNAIHLIGCKKVGPTSVEEASWARMACHRCLLYLGDLFRYQHEF
LDLATKNLAERCYYRALSVAPHMGMPFNQLGALMGSKYYDLEATYFYQRCLHSEVPFKGA
AWNLKRLYDHAGKRYSCLKRYQGRKLSHSQRQCWDNKRLLVSFLYLQSLLQPKKKFKAAR
LIALCQLVLEDFRLCLSYRPHQSVQCHASIDDKPPKGYLFLPDLLIFHMVVLCLMNVHSL
RKSGSKQYKPAVIFTLTLFSHLVQHVNTRIQAELQRQKLTPEDASSREGCWEKEPGKQHQ
DFPSTGLQHSNCQRSQGWSGISRESEAGFPSCCDSDETEEEETSSLSSQVQSDTSSEASH
SDATDEEGSGSLSSETIQKGGGTSKPTTAHPRNKLKAYVPPDSLLNLLKTTLSSSLSTPL
SQKLQGKHGLPLASVFSHNILTPPSEPSPAVSSSLCTEGEMSSFPDTEFYVGSSWEQRPS
VAQKNNLQTTQWKLDILSAEGLLPTIKVILSWLRSNHSLLSSHRRSVLSLWDHLCVLLNL
LPSVGDLQHPGLGLSRHLQDLLRSCQWPHTPKYLQLPEDIALFQQFPPQVSQDRADVGQD
LPSLTNREEVIVRICFFRSFGHFATRLPGQFLSFDSKLGVFVNSTLERSENPLQQLPRTP
TRIRFSKDIVQLWLQREVALLEKTLRGPQTRSVLTPYLFPDPRALCEHLPVIQKLATSAK
FFLIIPKVVVDTLYILKWEDRRALAAITFLEDELKRRNQYILCQSFVSKRLVRPRMTRPD
SDAWDLYNILGFCKSLLDSSRPGVLDPSSMVTIVTGVCLDRPRNFSYPLQLVLGMATEAG
VEIKNILNFHKEWKVIS
NT seq
2934 nt
NT seq
+upstream
nt +downstream
nt
atggagagaagccatgaagaaacacccaaggccaggctcctctaccaggaagtttgcctg
gcagctcagcgactggatttcttccttcaaaaaggaaatgcccacaaagaagtgttcaag
cctcacatcctggctctcagagagatggttcagcaagcctgcattaaactcatgttcctg
catcctgtggtttatggtaggaaggccgaagagctcttatggaggaaaatctactctgac
gtcatcatgctgctcatgaagaccaacaaaaaacaaatggacactttccaacactggggc
gggcccctgcaggctcacctgaaggctggcctcaggttctacgagcatctcttcctgttc
cttcagggccactacgagctgaggttacagagctacatagactggcctcacaatgccatc
cacttgattggctgtaaaaaagtgggacccacatcagtggaagaggcttcctgggcccgc
atggcctgccatcgctgcctcctttacctgggagacttgttccgctaccagcatgagttc
ctagacctggccaccaagaacttggctgagagatgctattatagggccttgtcagtggcc
ccacatatgggaatgcccttcaaccaactgggcgcgctcatggggagtaagtattatgac
ctggaagccacatacttctatcagcgctgcctccactcggaagtgccttttaaaggagcg
gcttggaacctcaaacggctctatgatcatgcgggaaagagatatagctgtctgaagagg
taccagggaagaaaactgtcccacagccagaggcagtgttgggacaacaaaaggcttctg
gtcagcttcctctaccttcagagcctcttgcagcctaagaaaaaattcaaagccgcaaga
ctgatagccctgtgccaactggttctcgaagactttcgtctctgtctttcctatcggcca
caccaatctgtccagtgccacgcttccatagatgataagcctcctaaagggtatcttttt
ctcccggaccttctcattttccacatggtggttctttgcctcatgaatgtgcacagcctg
aggaaatcaggctcaaaacaatacaaaccagctgtcatcttcaccctgactcttttctct
catctagtacagcatgtgaacacacggatccaggctgagctgcagaggcagaagctgact
ccagaagatgcttcttctcgtgaaggatgctgggagaaagaacctggaaagcaacatcaa
gactttccatctaccgggctccaacacagcaactgtcagagaagtcagggctggtctggt
atttctagggagagtgaggctggctttccttcctgctgtgactcagatgagacagaggaa
gaggaaacctcatccttaagttcccaggtccaatcggacacaagcagtgaagcctcccac
tcagatgcaacagatgaagaaggaagtggctccctgagttcagaaacaattcagaagggt
ggaggtacatctaaacctaccactgctcaccctagaaacaaactgaaggcatatgtacct
cccgacagtctccttaatctcttgaaaacaactctatcttccagcttgtcgactcctttg
agtcaaaaactccaaggaaaacatggcttgcccttggcttccgtcttcagtcataacatt
ctgacacctccgtctgagccaagtcctgctgtcagcagttctttgtgcaccgagggcgag
atgagcagctttccagacacagagttctacgtgggttcctcttgggagcagaggccctcc
gttgcccagaaaaacaatctccagaccacccaatggaaattggacattctttccgcagag
ggactgttgcctaccatcaaagtgatcctgagctggctgcgcagcaatcacagcctcctc
tcatcacaccggaggagtgtactcagcttatgggaccacctctgtgtgcttctgaacctg
ttgccctcggtgggagacctgcagcatccaggccttggtctgtctcgccatctccaggac
ttactgcggagctgtcaatggccacacactcccaagtaccttcagctccccgaagacatt
gccctgttccagcagttccctcctcaagtgtcccaggatagagcagacgtagggcaggat
ctgccttcactcaccaaccgggaggaagttatcgtgcgcatctgtttcttcagaagtttt
ggacactttgccaccagactcccaggacagtttttgagctttgattcgaaactgggcgtc
tttgtgaacagtacccttgaaaggtcagaaaacccacttcagcagctcccaagaacacct
acacgaattaggttttccaaagacatagtccagctttggcttcagcgtgaagtggcattg
ctcgagaagaccctccggggtccccagactcggtcagtattgaccccttacctgttccct
gaccccagggccctctgcgagcacctcccagttatacagaaactagccactagtgccaag
ttttttcttatcatacccaaggttgtggttgacacactgtacatcctaaaatgggaagac
cgcagagccctggcagccatcactttcctggaagatgagttaaagagaaggaaccagtac
attctctgccagtcctttgtgtccaagaggttggtgagacccagaatgactagaccagac
tctgatgcctgggacctctacaatattcttgggttctgcaaaagtctgctggactcctcc
aggccaggggtattggatcccagcagcatggtgactatcgttaccggtgtctgtttggac
cgccctaggaatttctcgtacccgttgcagttggtgctggggatggcaactgaagctggc
gtggaaatcaagaacatcctgaacttccacaaagagtggaaagtgatcagttga
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