Chionomys nivalis (European snow vole): 130889453
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Entry
130889453 CDS
T11437
Symbol
Synpo2
Name
(RefSeq) synaptopodin-2
KO
K24066
synaptopodin-2
Organism
cnl Chionomys nivalis (European snow vole)
Pathway
cnl04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cnl00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
130889453 (Synpo2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
cnl04990
]
130889453 (Synpo2)
Domain-containing proteins not elsewhere classified [BR:
cnl04990
]
PDZ domain-containing proteins
Other PDZ domain-containing proteins
130889453 (Synpo2)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PDZ
Calsarcin
PDZ_6
PDZ_2
Motif
Other DBs
NCBI-GeneID:
130889453
NCBI-ProteinID:
XP_057649171
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Position
18:complement(34484160..34636124)
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AA seq
1256 aa
AA seq
DB search
MGTGDFICISMTGGAPWGFRLQGGKEQKQPLQVAKIRSQSKASDSGLCEGDEVVSINGNP
CADLTYPEVIKLMESITDSLHLLIKRPCSETLDSETENANHQHLTHEGPMESTTLQILPA
TNTQGKDFFLASVPSKVPLTEDQGNDWGYAECTTGEKIPQMLGSQEEHLVEEVILREKAE
EGQPGRVVELQLSLSKERHQYVSGPMVTLQGNKNSKSPDPDWSSQNERTVHINSVSAPEE
EADTSLLPSTTSQTSSGRQLSVREAGGAGLPQVEVILDCSDRQKAEECRLQAGKGCVASG
VEGGRSEAPPSLVSFAVSPEGTEQGEDQRPGKDHSRPHKHRARHARLRRSESLSEKQVKE
AKSKCKSIALLLTDAPNPNSKGVLMFKKRRRRARKYTLISYGTGELEREEEEEDQEEGDK
DEISEVAFLGTSESEVDEELLSDIDDDTQLVNFDWDSGLVDIEKKLSRGDKMEMLPDTTG
KGALMFAKRRERMEQFAAQNEEEKASALPGREPDGLQTDGLRTVTSYQRKEEGSVRMQSS
VSESSIQMGCSLGNMPQQNGFSGISETAGAQRMIPMNRTAKPFLGTMNQPTAPFSPTRSV
TSPMSDFPAPPPYSAVSPPPEAFSRGVASPITGPAQPPPWPQPAPWSQAAFYDSSEQIAS
RDERIAVPAKRTGILQEARRRGTTKPMFTFKETKVSPNPELLSLLQNAEGKRGTGAGGDS
GPEEDYLSLGAEACNFMQSSAKQKTPPPVAPKPAVKSSSSQPVTPVSPVWSPGVAPSQRP
AFSTSNLPNPPQVTAVSSIKIAQPSCPPARPASSLNLAGPFKGPQAAVVSQNYTPKLSAP
TPQVNAAHAGAGGPSNELPGMSGKGAQLFAKRQSRMEKYVVDSDTVQAHAVRAQSPTPSL
PASWKYSSNVRAPPPMAYNPIHSPSYPLAAIKSQPPTAQASKTSKKKGKKPLNTLDVMKH
QPYQLNSSLFTFQPPDTKDSLPQKSTVKVTSGPAVKHALPPRQVNVGSPTNAQASSVYSV
PAYPSQPSFFAEPTSPVSASPVPVSVPTSPKQESASSSYFVAPRPKFSAKKSGVTVQASG
RSLSLPGKPAPPNISASPWLYQPAHGYPSRPTLGLEKANKRPTPWEAAARSPLGLVDDAF
GPRSIQESIVANVVSAARRKACSGSQEDWKGRLSFVSQTQKTNMSFPERQEYNAPSPVSS
LMSTHSVYSSQLPYVSPRQQFRYDPKIMPMETRSEYGLPLGGYNYNPHPRGWRHQP
NT seq
3771 nt
NT seq
+upstream
nt +downstream
nt
atgggcactggagattttatctgcatttccatgactggaggggcgccctgggggttcagg
ctgcaaggaggcaaggaacagaagcagcccttgcaagtggcgaagattcgaagtcagagc
aaagcgtcagactccggcctgtgtgagggggatgaagtggtgtccatcaatggcaaccct
tgtgcagacctcacctaccctgaagtcatcaagcttatggagagcataacggattctctc
cacttgcttatcaaaagaccatgcagtgagactttggactctgaaacagaaaacgcaaac
catcagcatcttacacatgaggggcccatggaaagtaccaccttgcagattcttccagcc
acaaacacccagggcaaagacttcttcctcgcttcagtcccaagtaaagttcccctaacc
gaggaccaaggaaatgattggggttatgcagaatgtacaacgggagaaaaaattccccag
atgcttggctcccaagaagaacacttggtagaggaggtcatcttaagggaaaaggcagaa
gaaggccagccgggccgtgtggttgagctccaactgtccctctcaaaggaaagacatcag
tatgttagtggtcctatggtgactctccaggggaacaagaactccaagtctcctgaccca
gactggagctcacaaaacgagaggaccgtccacatcaattcggtctctgctcctgaggag
gaagcagacacttctctcctgcccagcacaacaagccagacctccagcggccggcagctg
agcgtgagagaagcaggaggcgcagggctgccccaggtggaagtgattctggattgctct
gacaggcagaaggcggaagagtgcaggctgcaggcaggaaaggggtgtgtggcttctggg
gtggaaggagggcggtcagaagcacctccttctctggtctcctttgccgtctcaccagaa
ggcaccgagcagggggaagatcaacgcccgggaaaggatcacagcagaccacacaaacac
agggcacgacatgctcggctcaggaggagcgaaagtctgtctgagaagcaagtgaaagaa
gctaagtctaaatgcaaaagcatcgctctccttctaacggatgctcccaaccccaactcc
aaaggggtgttgatgtttaagaagcggaggcggagggcccggaagtacaccctaatcagt
tacggtactggcgagcttgaaagagaggaggaggaggaggaccaggaagaaggtgacaag
gacgagataagtgaagtcgcatttcttggaacgagcgagtcagaagtggatgaagagtta
ctgtcggacattgacgacgacacacaacttgtgaactttgactgggattctggactggtg
gacattgaaaagaaactgagccgaggggacaagatggagatgctgccagacaccacaggc
aagggggcgctcatgtttgctaagaggagagagaggatggaacagttcgctgcccaaaac
gaagaggagaaagcgagtgcgctgccaggcagagaaccagatgggctgcagacggatggt
ctgagaaccgtgacttcttatcaaaggaaggaagagggatccgtgagaatgcagagctct
gtgagtgaaagctccatccagatgggctgtagtcttggcaacatgccacaacagaatggc
ttcagtggcatttctgagactgcaggggcccagaggatgatccctatgaatagaaccgcc
aagcccttcctgggaactatgaaccagccaacagcccccttctccccaacccggagtgtg
actagccccatgtccgactttcctgccccgccaccttactctgccgtctcacctccacct
gaagccttttccagaggggtagcaagtccaatcactggcccagcacagcccccgccatgg
ccccagcctgctccatggtcacaggcagcgttctacgattcttctgagcaaatagcttcc
cgggacgagaggatcgcagtgccggcgaaaagaacaggcatactgcaggaagccagaagg
cgaggcacaacaaaacccatgtttacgttcaaagaaaccaaagtgagccccaaccctgag
ctcctgtcacttcttcaaaatgcagaaggtaagcgaggcactggagctggaggggactcg
gggccggaagaagactatctcagcttaggcgcagaggcttgtaacttcatgcaaagttct
gctaagcagaagaccccacctcctgttgctccaaagcctgctgtcaagtcctcctcctca
caaccagtaaccccagtttctccagtctggtctccaggagtggctccatcccagcgtcct
gccttctccacatcaaacctaccgaacccaccacaggtcacagctgtgtcctccatcaaa
atagcccaaccttcctgccctcctgcccggcctgcgagctcactgaacctggccggtccc
ttcaaagggccccaagctgcagtggtcagtcaaaactacacacccaagctatcggcaccc
acaccgcaagtaaatgctgctcacgctggtgccgggggaccatccaatgagcttcctgga
atgagcgggaaaggagcccagctgtttgctaaaaggcagtcgaggatggagaagtacgtg
gtagattccgacacggtgcaggcccatgcagttcgggcccagtctcctactccgtccctg
ccagccagctggaagtactcctcgaatgttcgagcaccccctcctatggcctacaatccg
atccattccccctcatacccactggccgctatcaagtctcagccacctactgcccaggcc
tccaaaacgagcaagaaaaagggcaagaaaccgcttaacactttggatgtcatgaagcat
caaccgtatcagctcaactcgtctctgtttaccttccaacctcctgacacaaaggatagc
ctccctcaaaagtcaacggtcaaggtcacctcaggcccggctgtgaagcatgcccttcct
ccccgacaggtgaatgttggctctcccaccaatgcgcaggcttcgtctgtgtactcggta
ccggcctatccctctcagccctccttcttcgcggagcccacctcgcccgtcagcgcatcc
ccagttcctgtgagtgttcccacctcgccgaagcaagaatcggcttcctcgtcgtatttt
gtggcaccaaggccgaagttctcagccaagaaaagcggtgtcacagtccaggcgagtgga
cgctccctttctcttcctggaaaaccagccccgcccaacatatctgcatctccatggctg
taccagccggctcacggttaccccagcaggccgaccctcgggctggagaaagctaacaag
agaccgacaccttgggaagcagcggctaggtctccccttggcctagtggatgacgccttc
ggacccagaagcatccaggaatccattgtggcgaatgtagtctctgcagctcggaggaag
gcgtgctcagggtcccaagaggactggaaggggagactgtcctttgtctcccaaactcag
aagaccaacatgagtttccctgaaaggcaagagtataatgctccatccccagtcagcagc
ctcatgtccacccactccgtatacagttcccagttgccatatgtgagccctaggcagcag
ttcagatacgacccgaaaataatgcccatggagaccaggtctgaatacggtcttccatta
ggtggctacaattacaacccacacccacgggggtggagacaccaaccatga
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