Chionomys nivalis (European snow vole): 130890487
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Entry
130890487 CDS
T11437
Symbol
Skic2
Name
(RefSeq) SKI2 subunit of superkiller complex protein
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
cnl Chionomys nivalis (European snow vole)
Pathway
cnl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cnl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130890487 (Skic2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cnl03019
]
130890487 (Skic2)
Enzymes [BR:
cnl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
130890487 (Skic2)
Messenger RNA biogenesis [BR:
cnl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
130890487 (Skic2)
mRNA degradation factors
3'-5' decay
Ski complex
130890487 (Skic2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
DUF3516
Motif
Other DBs
NCBI-GeneID:
130890487
NCBI-ProteinID:
XP_057650411
LinkDB
All DBs
Position
19:complement(61972886..61983013)
Genome browser
AA seq
1243 aa
AA seq
DB search
MLDTERLVLPPPDPLKLPLGALEVGCTGHWELLNVPGAPQSTLPHGLPPCAPDLQQEAEQ
LFLSSPAWLPLHGVEHSARKWQRKRDPWSLLAALGAPVPSDLQAQRHPTTGQILGYKEVL
LENTNLSATTSLSLRRPPGPAPQSLWGNPTQYPFWPGGMDEPTMTDLSTREEAEEEIDFE
KDLLTVPPGFKKGVDFAPKDHQAPVPGLLSLSRLLEPLDLSGGDEDEGEPAGGPGGGTAS
ASPCSAPLGRASSLEDLVLKEASTIASPLEPPKPASQEQWAIPVNVTSPVGDFYRLIPQP
AFQWAFEPDVFQKQAILHLEQHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIK
ALSNQKFRDFRNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDLEWVIFD
EVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVISTVAR
PVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTKGYYAAVEAKKERMSKHAQTFGAKQPTH
QGGPAQVRGVYLSLLASLRARAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLF
LQRCLARLRGSDRQLPQVLHMSELLRRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATE
TFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKDRV
PEMADLHRMMMGKPSQLQSQFRLTYTMILNLLRVDALRVEDMMKRSFSEFPSRKDSKAHE
EALAELTKRLGALEEPDVTGQLADLPEYYSWGEELTETRNMIQRRIMESVNGLKSLSTGR
VVVVKNEEHHNALGVILQVSSNTSRVFTTLVLCDKPVVSESPGDKGPITPDVPYPDDLVG
FKLFLPEGPCEHTVAKLQPGDVAAISTKVLRVNGEKISEDFSKRQQPKFRKDPPLAAVTT
AVQELLRLAQAHPSGPPTLDPVNDLQLKDVSVVEGGLRARKLEELIRGAQCVHSPRFPAQ
YLKLRERRQIQKEMERLSFLLSDQSLLLLPEYHQRVEVLRTLGYVDEVGTVKLAGRVACA
MSSHELLLTELMFDNALSALRPEEIAALLSGLVCQSPGDPGDQLPSTLKQGVERVKAVAK
RIGEVQVACGLNQTVEEFVGELNFGLVEVVYEWARGMPFSELAGLSGTPEGLVVRCIQRL
AEMCRSLRGAARLVGEPVLGAKMETAATLLRRDIVFAASLYTQ
NT seq
3732 nt
NT seq
+upstream
nt +downstream
nt
atgctggacacagagagactcgtgctgcctccccccgatcccttgaagctgccccttgga
gctctggaagtgggctgcactgggcactgggagctgctgaacgtgcctggggctccacag
agcactctaccccacggcctccctccctgtgcccctgacctccagcaggaagcggagcag
ctgttcctctcgtctcccgcctggcttcctctgcatggtgtggaacactcagctagaaaa
tggcagaggaagagggatccctggtctcttttggctgctctgggggctcctgtcccatcc
gacctccaggcccagagacacccaaccacaggccagatactgggctacaaggaggtcctg
ctggagaacacaaacctgtcggccacaacctccttgtcccttcgccggcctccagggcca
gccccccagtcactatggggcaacccaacacagtaccctttctggcctggtgggatggac
gagcccaccatgacagatttaagcactcgggaggaagctgaggaggagatagactttgag
aaagatcttctcactgtcccacctggcttcaagaaaggcgtggattttgcccccaaggat
caccaagctcctgtgccaggtttgctcagcctcagccgcttgctggagcccctagatctg
agtggaggcgatgaggacgagggtgagccagcaggaggccccggagggggcactgcctcc
gcctctccgtgcagcgctcccctgggccgagcaagcagcttggaggacctcgtgttgaag
gaagcatccacaattgcatcccccctggaacctcccaaacctgcatcccaggaacagtgg
gccatacctgtgaatgtcacctcccctgtaggtgatttttaccgtctcattcctcagcct
gccttccagtgggcgtttgagccagatgtgtttcagaagcaggccatcctgcacttggag
cagcacgactctgtctttgttgcggctcacacatccgccggcaagacagtggtggctgaa
tacgccattgccctggcccagaaacacatgacccgtaccatttacacgtctcctatcaaa
gccctgagcaaccagaagtttcgggatttccggaacacatttggggacgtggggctgctc
acaggggacgtgcaactgcacccagaggcatcctgccttatcatgaccacagagatcctt
cgctccatgctgtacagtggctcagacgtcatccgggacttggagtgggtcatctttgat
gaagtccactatatcaacgatgctgagcgtggggtcgtgtgggaggaggtgctcatcatg
ctccctgaccacgtctccatcatccttctgagtgccaccgtccccaacgccctggagttt
gccgactggattgggaggctaaagcggcggcagatctatgtgattagcacggttgcccgt
cctgtccccctggaacactatctcttcacaggaaacagccccaagacgcagggggagctc
ttcctgctgctggactcccgaggggccttccacaccaaggggtactatgctgcagtggag
gccaagaaggagaggatgagcaagcatgcccagacctttggggccaaacagcccacgcac
cagggggggcctgcacaggtccgaggggtgtacctgtccttgctggcttccctccgggcc
cgggctcagctgcctgtggtcgtgttcaccttttcccgaggccgctgtgacgagcaggct
tcaggcctcacctctctggatctcactacaagctcggagaagagcgagatccacctcttc
ctgcagcgctgccttgcacggctccgaggctctgaccgacagctaccccaggtcctgcac
atgtcagagctccttcgccggggcctgggtgtgcaccacagtggcatcctgcccatcctt
aaggagattgtggagatgctgttcagccgagggctggtcaaggttctgtttgccactgag
acctttgccatgggagtaaacatgccagcgaggaccgtggtgtttgactctatgcgcaaa
cacgatggctccaccttccgggacctgctgcctggggagtatgtacagatggccggccgg
gcgggccggaggggcctggaccccacgggcacagtcatcctgctctgtaaggaccgagtg
cctgagatggcagatctccaccgcatgatgatggggaagccgtcccagcttcagtcccag
ttccgcctcacgtacactatgatcctcaacctgctgcgggtggacgccctcagggtggag
gacatgatgaagaggagcttctcagagtttccatcccgcaaggacagcaaggcccatgag
gaggctctggctgaactcaccaagaggctgggggccttggaggaacctgacgtgactggc
caactggctgacctgcctgagtattacagctggggggaggagctgacagagacccgcaac
atgatccagcgacgcatcatggagtctgtgaacgggctgaaatctctctccacgggaagg
gtggtagttgtgaagaacgaggagcatcacaatgcgttaggcgtgatcctgcaggtctcc
tcaaacaccagcagagtgtttacaacgttggtcttgtgtgataagcctgttgtgtctgag
agcccaggggacaaggggccaatcactccagatgtgccctacccagacgaccttgtgggc
ttcaagctgttcctgcctgaagggccctgtgagcacaccgtggccaagctccagccagga
gatgtggctgccatctccaccaaagtgctccgggtgaacggggagaagatctctgaggac
ttcagcaagaggcagcaaccaaaattcaggaaggaccctccccttgcagctgtgaccact
gcagttcaggagctgctgcgtctggctcaggcccatccatcagggcccccgacccttgac
cctgtcaacgacctgcagctcaaggatgtgtcagtggtggaaggtgggctccgggcccgg
aagctggaggagctgatccggggggctcagtgtgtgcacagcccccggttccctgcccag
tacctgaagctgcgggagcgaaggcagattcagaaggaaatggagaggctgagcttccta
ctgtctgaccagtcgctgctgctgctccccgagtaccaccagcgcgtagaggtgctccgg
accctgggctatgtggatgaggtgggcacagtgaagctggcaggccgagtggcctgcgcc
atgagcagccatgagctgctcctcacagagctcatgtttgacaatgcgctgagcgccctg
cgaccagaggagattgcagctctgctctccggcctggtctgccagagccccggtgaccct
ggggatcagctcccaagcaccctcaaacagggggtggagcgtgtcaaagctgtggctaag
cggattggtgaggttcaggtggcctgtggcctgaaccagacagtggaagaatttgtggga
gagctgaattttgggctggttgaagttgtgtatgagtgggctcggggtatgcccttctcc
gagttggccgggctctcagggaccccagaaggcttagtggtccgctgcatccagcgcctg
gctgagatgtgtcgctcgcttcgaggagcagcccgtttggtaggggagcccgtgctgggc
gccaagatggagacggcagccaccttgctgcggcgggacattgtcttcgcagccagcctc
tacacccagtaa
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