Chionomys nivalis (European snow vole): 130890556
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Entry
130890556 CDS
T11437
Symbol
Dhx16
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
cnl Chionomys nivalis (European snow vole)
Pathway
cnl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cnl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130890556 (Dhx16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cnl03041
]
130890556 (Dhx16)
Enzymes [BR:
cnl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
130890556 (Dhx16)
Spliceosome [BR:
cnl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
130890556 (Dhx16)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
WHD_HA2
AAA_22
AAA_30
AAA_19
SecA_DEAD
Cas3-like_C_2
Flavi_DEAD
nSTAND3
SRP54
Motif
Other DBs
NCBI-GeneID:
130890556
NCBI-ProteinID:
XP_057650577
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All DBs
Position
19:62825482..62836778
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AA seq
1045 aa
AA seq
DB search
MATPAGLERWVQEELHSVLGLSERHVAQFLIGTAQRCASAEEFVQRLRDTETLDLGGPAR
DFALRLWSKVPRKAVVEKPARAAEREARALLEKNRSYKLLEDSESDEEAVGRDTSSLQKK
RRRRKHLRKKHHGEEEEEEEEVSEVGKGKSGGSKSPAEDKPASEDEWERTERERLQDLEE
RDAFAERVRQRDKDRTRNVLERSDKKAYEEAQKRLKMAEEDRKAMVPELRKKSRREYLAK
REREKLEDLEAELADEEVLFGDVELSRHERRELKYKRRVRDLAREYRAAGEQEKLEATNR
YHMPKETRGQPARTVDVVEEESGAPGEEQRRWEEARLGAASLKFGARDAASQEPKYQLVL
EEDETIEFVRAAQLQGDEEPTSAPAPSAQAQQKESIQAVRRSLPVFPFREELLTAIASHQ
VLIIEGETGSGKTTQIPQYLFEEGYTKKGMKIACTQPRRVAAMSVAARVAREMGVKLGNE
VGYSIRFEDCTSERTVLRYMTDGMLLREFLSEPDLASYSVVMVDEAHERTLHTDILFGLI
KDVARFRPELKVLVASATLDTARFSTFFDDAPVFRIPGRRFPVDIFYTKAPEADYLEACV
VSVLQIHVTQPPGDILVFLTGQEEIEAACEMLQDRCRRLGSKIRELLVLPIYANLPSDMQ
ARIFQPTPPGARKVVVATNIAETSLTIEGIIYVLDPGFCKQKSYNPRTGMESLTVTPCSK
ASANQRAGRAGRVAAGKCFRLYTAWAYQHELEETTVPEIQRTSLGNVVLLLKSLGIHDLM
HFDFLDPPPYETLLLALEQLYALGALNHLGELTTSGRKMAELPVDPMLSKMILASEKYSC
SEEILTVAAMLSVNNSIFYRPKDKVVHADNARINFFLPGGDHLVLLNVYTQWAESGYSSQ
WCYENFVQFRSMRRARDVREQLEGLLERVEVGLTSCQGDYVRVRKAITSGYFYHTARLTR
SGYRTVKQQQTVFIHPNSSLFEQQPRWLLYHELVLTTKEFMRQVLEIESSWLLEVAPHYY
KAKELEDPHAKKMPKKVGKTREELG
NT seq
3138 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgccggcggggctggagcgatgggtgcaggaggagctgcactcggtgctaggg
ctgagtgagcggcacgtcgcgcagttcctgatcggcacggcgcagcgctgcgcctcggct
gaggagtttgtgcagcgcctgcgcgacaccgaaacgctggacctgggcgggccggcgcgg
gacttcgctctgaggctctggagcaaggtgccacggaaggccgtggtggaaaagccagct
cgggcagctgagcgagaggcccgagccctgctggagaagaaccgatcgtataagttgctg
gaagacagcgagagcgatgaggaggcagtgggcagggacacgagcagtctccagaagaag
cggagaagacggaaacacctcaggaagaaacaccacggggaggaggaagaagaagaggaa
gaggtttctgaagtaggaaagggaaagtcaggggggagtaagtcacccgcggaggacaag
ccagcctcagaggatgagtgggagcggacagagcgcgagcgtcttcaggacctagaggaa
cgggatgcctttgcagagcgggttcgtcaacgggacaaggaccggacccggaatgttctg
gagcggtcagacaagaaggcttatgaagaggctcagaaacgcctcaagatggcagaggaa
gaccggaaagccatggtccctgagctccggaagaagtctcgccgagaatacctggcgaag
cgggaacgggaaaagctggaggacctggaagcagagctggctgatgaggaggtcctcttc
ggggacgtggagctgagccgccacgagcgcagggaactcaagtataagcgacgagtgagg
gacctggcccgggagtaccgtgcggccggcgagcaggagaagctggaggccacaaaccgc
taccatatgcccaaggagactcgaggccagccagctcgaactgtggacgtcgtggaggag
gaatcgggtgccccaggagaggagcagcggcgctgggaggaggcccggctaggtgccgca
tctcttaagtttggggcccgagatgccgcctcgcaggagcccaagtaccagctagtgctg
gaggaggatgagaccattgaatttgtccgtgctgctcagctccagggtgacgaggagccg
acctcagccccagccccatcagcccaggcccagcagaaggaatccatccaggccgtgcgc
cgcagcctgccggtgttccccttcagagaggagctcctgaccgccattgccagtcaccag
gtccttatcatcgaaggcgagactggctctgggaagaccacacagatcccacagtacctc
tttgaggagggctacacgaagaagggtatgaagattgcgtgcacccagccccggagagtg
gcggccatgagtgtggctgcccgagtggcccgtgagatgggtgtgaagctcgggaatgag
gttggctacagcatccggtttgaggattgcacgtccgagcggaccgttctgcgctacatg
acagatgggatgctgctccgggagttcctctctgagcctgaccttgcaagctacagtgtg
gtgatggtggacgaagcccacgaacggactctgcacacggacattctcttcgggttaatt
aaggatgttgctcgattccgccctgagctcaaggtcctggtagcttcagccacactggac
acggcccgtttttccaccttctttgatgacgcccccgtcttccgaatccctggacgcagg
tttccagttgacatcttctataccaaggccccagaggctgactacctcgaagcctgcgtt
gtgtctgtgctgcagatccatgtgacgcagccccctggggatatactcgtgttcctgaca
gggcaggaggagattgaggccgcctgtgagatgcttcaggaccgctgccgtagactgggt
tccaaaatccgggagctcctggtgctgcccatttatgcgaacctgccctccgacatgcag
gctcgcatcttccagcccacaccccccggggcccgaaaggtggttgtggcgacaaacatt
gcagaaacctcgctcaccatcgaaggcatcatttatgtgctggacccagggttctgcaag
caaaagagctacaacccccggacaggcatggagtctctcaccgtcacgccctgcagcaag
gcctcagccaatcagcgggctggccgtgcaggtcgggtggctgcagggaagtgtttccgc
ctgtacacggcctgggcctatcagcatgagctggaggagaccacagttcctgagatccag
aggacaagcctgggcaacgttgtgctactgctgaagagcctagggatccatgacctgatg
cactttgacttcctggaccctccgccctatgagaccctgctgttggctctggaacagctg
tatgcgcttggagccctcaaccaccttggagaactcaccacgtctggtcgaaagatggca
gagctgcctgtggatcctatgctgtctaaaatgatcttggcctccgagaagtacagctgc
tcagaagagatcctgacagtggccgctatgctgtctgtcaacaactccatcttctaccgc
cccaaggacaaggtcgtccatgcagacaacgcccgcatcaacttcttcctccctggcggg
gaccacctggttctgctaaatgtgtacacacagtgggctgagagcggctactcttcccag
tggtgctatgagaacttcgtacagttcaggtccatgcgccgagcccgggatgtgcgagag
cagctggaggggctcttggagcgtgtggaagtcggcttgacttcctgccaaggagactac
gttcgtgtgcgcaaggccatcacttccggttatttttaccacacagcaaggctgactcgg
agtggctaccgcacagtgaagcagcagcagacggtgtttatccatcccaactcttctctc
tttgaacagcagccacgctggttgctctaccacgagcttgtcctgacaacaaaggagttc
atgagacaggtactagagatcgagagcagctggcttttggaagtggctcctcactactat
aaggccaaggaactggaagatccccatgctaagaaaatgcccaaaaaagtaggcaagaca
cgagaagaactgggctag
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integrated database retrieval system
