Clostridium neonatale: CNEO_0535
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Entry
CNEO_0535 CDS
T08280
Symbol
rho
Name
(GenBank) Transcription termination factor
KO
K03628
transcription termination factor Rho
Organism
cnn
Clostridium neonatale
Pathway
cnn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cnn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CNEO_0535 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cnn03021
]
CNEO_0535 (rho)
03019 Messenger RNA biogenesis [BR:
cnn03019
]
CNEO_0535 (rho)
Transcription machinery [BR:
cnn03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CNEO_0535 (rho)
Messenger RNA biogenesis [BR:
cnn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CNEO_0535 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
S1CSD-TOTE-2
Spore_III_AA
AAA_22
OB_RNB
NACHT
AAA
AAA_25
ABC_tran
SAP
DUF3182
FDF
Motif
Other DBs
NCBI-ProteinID:
CAH0435262
LinkDB
All DBs
Position
CNEO:531542..532996
Genome browser
AA seq
484 aa
AA seq
DB search
MTKQDYEKMTLTKLKEVAKEIGIKNISKFKKDDLIEEILKVSPNSIEKEGVVLRESISPK
PTTISTENVEIKNSSNSYNKEKRIVENIKNSREDIKRDSDQEEKKERVKERINEASVVSG
ILEIQENNNFGFLRCKNYLTSSEDVYVSPSQIRRFNLRTGDEVQGKVREAKEGEKFKALL
YVESVNGENPEKAIGRKNFETLIPIYPKERLRLETSNSNDLSSRLMDIICPIGKGQRGLI
VAPPKAGKTTLLKKIAQNISKNYPDIKLIVLLIDERPEEVTDMMRSINGDVVYSTFDEEP
QNHAKVSRMVLERAKRMVEQGKDVVILMDSITRLSRAYNLTITPTGRTLSGGLDPGALIM
PKKFFGAARNIEEGGSLTILATALVETGSRMDDMIFEEFKGTGNMEVHLDRRLQERRIFP
AIDIYKSGTRKEDLILSKEEQEVSFAIRRNMYNDGNVDDITENLINMLSKTKNNSEFINT
FSKK
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
ttgaccaaacaagattatgaaaagatgactttaacaaagttaaaagaagtagcaaaggaa
attggtataaaaaatatatcaaaatttaaaaaagacgatttaatagaagaaatattaaaa
gtttcacctaattctattgaaaaagaaggtgttgtcttgagagagagtatatcacctaaa
cctactacgataagtacggaaaatgtagagattaaaaatagttctaattcatacaacaag
gaaaaaagaatagtagaaaatataaaaaatagcagagaagatataaagagagattctgac
caagaagagaagaaagagagagtaaaggaaagaattaatgaagctagtgttgtatccggc
atattagaaatacaagaaaataataatttcggatttttacgctgcaagaattatttaaca
agcagtgaagatgtttacgtttcaccatctcaaataagaagatttaacttaagaactggt
gatgaagttcaaggaaaagttagagaagctaaggaaggtgaaaaatttaaggcactttta
tatgtagaaagtgtaaatggagaaaatccagaaaaagccataggaagaaagaattttgaa
actttaatacctatatatcctaaagaaagattaagattagaaacttcaaatagtaatgat
ttatcttcaagattaatggatataatatgcccaataggtaaggggcaaagaggcttaata
gtggctccacctaaagcaggaaagactacattgttaaaaaagattgctcaaaacatatct
aagaattatccagatataaaattaatagtgttacttattgatgaaaggcctgaagaagta
actgatatgatgagatctataaatggagatgtggtatattcaacttttgatgaagaacct
caaaatcatgctaaagtatctagaatggtattagaaagagctaaaagaatggttgagcaa
ggaaaagatgtagttatacttatggatagtataactagattatctagagcttacaattta
acaataactccaactggtagaacattatctggtggtttagatcctggtgcattaataatg
ccaaagaaattcttcggtgcagcaagaaacattgaagaaggcggaagcttaacaattctt
gcaactgcacttgtggaaacaggttcaagaatggatgatatgatttttgaagagtttaaa
ggaactggtaatatggaagttcatttagatagaagacttcaagaaagaagaatattccca
gcaattgatatttataaatctggtacaagaaaagaagatttaatattatctaaagaagaa
caagaagtgtcatttgctataagaagaaacatgtataatgatggaaacgtagatgatata
acagaaaatcttataaacatgctttctaaaacaaagaataatagtgaatttataaatact
ttttcaaaaaaataa
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