Clostridium neonatale: CNEO_1310
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Entry
CNEO_1310 CDS
T08280
Name
(GenBank) Putative DNA helicase, UvrD/REP type
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
cnn
Clostridium neonatale
Pathway
cnn03420
Nucleotide excision repair
cnn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cnn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CNEO_1310
03430 Mismatch repair
CNEO_1310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cnn03400
]
CNEO_1310
Enzymes [BR:
cnn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CNEO_1310
DNA repair and recombination proteins [BR:
cnn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CNEO_1310
MMR (mismatch excision repair)
Other MMR factors
CNEO_1310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C_2
DEAD
NACHT
DUF3102
GUN4_N
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
CAH0435995
LinkDB
All DBs
Position
CNEO:1309846..1312119
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AA seq
757 aa
AA seq
DB search
MDEILLEEQRVLEDKRKLIKNEINFKSNRLEEVATKLSQLVKEVKGSYSVEKETFKVLKE
SLEKEIGNYTEAINNPYFGRIDFKENGNFEETIYIGKNGISNTKDVEEIVVDWRAPVADL
YYSGTSKESYYKSPKGIIEGKLETKRKFLFNNDEIEKVFDEAIDQIMVSGEEGKELVDEF
LKINLEANTGKKLKEVVSTIQKEQNEIIRWPKNLPIIVQGSAGSGKTTIALHRLAYLIYR
YNENLKGEDILVLAPNKLFLNYISDILPSLDVSEVKQNTFEDLMLSKLKIKLEVYDKDKK
IKQILNEKDEFKKKLILNSSKVKGTLVYKKMLERFIKLIEHISFDIKDIRVKEEVLFDKK
YIEKLYKNDFKMHPINKRKDEIKKYLQLNLKNKVEVTLAAIDEKYDFKVLEIKREHKDIE
KRRKFLIDIYDERDMLKESVKKNAKREFNAYFKEWKSINSSDLYKEFFNNEELFDSATAG
RIPKVLEQYMKSEFDNNIKNNIIDEDDLAPLYYIKILIDGISDEERFKHIVVDEVQDYSM
FQLDVIRNLAIGNSLTLVGDLAQGIYYYKGINSWDELIKDVFNSEATYVQLSQSYRSTVE
IIDFASKVLNSQNLNIKECKPVLRHGEKPKIIEVKIEEEYVTEIENIIKLLKENNKSSMA
VITKDDKEANNFYRILQKNSKYKFGIVTEKNDKCEEDFLIIPSYLTKGLEFDCTILLNPS
EDSYSESLLDKKLLYVSLTRALHMEFIIKLDSITKLI
NT seq
2274 nt
NT seq
+upstream
nt +downstream
nt
atggatgaaatattattggaagagcagagagtgttagaggacaaaagaaaattaataaag
aatgagattaattttaaaagcaatagattagaagaggtagcaaccaaattgagtcagctt
gtaaaagaagtgaaaggaagttatagcgtagaaaaagaaacttttaaggtattaaaagaa
tctttggaaaaagaaatagggaattatactgaagcaataaataatccatactttggaaga
attgattttaaagaaaacggaaattttgaagagacaatatatataggaaagaatggaata
agtaatacaaaagatgttgaagaaatagtagttgactggagagcaccagttgctgattta
tattatagtggaacatcaaaagagtcatattataaatcgcctaaaggcattattgaagga
aagctagaaactaaacgaaagttcttatttaataatgatgaaatcgaaaaagtttttgat
gaggctattgatcaaataatggtaagtggtgaagaaggaaaagagttagtggatgaattt
ctaaagataaatttagaagctaatactggaaaaaaacttaaagaagtagtatcaactata
caaaaggaacaaaatgaaataataagatggcctaaaaacttacctataatagttcaaggg
tcagcaggctctggaaaaacaacaatagcattacatagattggcataccttatatacaga
tataatgaaaatttaaaaggtgaagatatattagttttagcaccaaataaattgttctta
aattacatttcagacattctaccaagtttagatgttagtgaggttaaacaaaacaccttt
gaagacctgatgttatccaagttaaagattaaattagaagtatatgataaagataaaaaa
atcaaacagatattaaatgaaaaagatgagtttaagaaaaaactgatattaaattctagt
aaagtgaaaggaacattagtttataaaaaaatgcttgaaagatttattaaattaattgag
catataagctttgacataaaagatattagagttaaagaagaagtattatttgataagaag
tatattgaaaaactctacaaaaatgactttaagatgcatcctataaataaaagaaaagat
gaaataaaaaaatatctgcaattgaatttgaaaaacaaagttgaagttacattagcagct
atagatgaaaaatatgactttaaggttttagagatcaaaagagaacataaagatattgaa
aaaagaagaaaatttttgattgatatatatgatgaaagggatatgctaaaagaaagtgta
aaaaagaatgcaaaaagagaatttaatgcttattttaaagagtggaaatcaataaattct
agtgacttatataaagaattttttaataatgaagagctttttgatagtgcgacagcaggg
agaatacctaaagtattagaacaatatatgaaaagtgaatttgataataatataaaaaat
aacattatagatgaagatgatttagcacctttatactatataaaaatattaattgatggg
ataagtgatgaagaaagatttaaacatatcgtagttgatgaagttcaagattatagcatg
tttcaattagatgtaataagaaatttagctataggaaattctttaactttagtaggagat
ttagcacagggaatttattattataagggaataaattcatgggatgaattaataaaagac
gtatttaatagtgaggctacatatgtacagcttagccaaagttaccgttcaactgtggaa
attatagattttgcatcaaaggttttaaactcacaaaatcttaatattaaagaatgtaag
ccggttttaaggcatggtgaaaaaccaaaaataatagaagttaaaatagaagaagagtat
gtaacagagatagaaaatataataaaacttttaaaagaaaataataaaagtagtatggct
gttataacaaaagacgataaagaggcaaataatttttatagaatattacagaaaaatagt
aaatataaatttggaattgttacagaaaaaaatgataaatgtgaagaagattttttaata
attccatcatatttaacaaaggggttagagtttgactgtacaatactattgaatccaagt
gaagatagctatagtgaaagtttattagataaaaaactattatatgtttcattaacaaga
gcattgcacatggaatttataataaagctagatagtataactaaactcatataa
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