Clostridium neonatale: CNEO_1818
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Entry
CNEO_1818 CDS
T08280
Name
(GenBank) Putative DNA helicase, UvrD/REP type
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
cnn
Clostridium neonatale
Pathway
cnn03420
Nucleotide excision repair
cnn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cnn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CNEO_1818
03430 Mismatch repair
CNEO_1818
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cnn03400
]
CNEO_1818
Enzymes [BR:
cnn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CNEO_1818
DNA repair and recombination proteins [BR:
cnn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CNEO_1818
MMR (mismatch excision repair)
Other MMR factors
CNEO_1818
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
Viral_helicase1
UvrD_C_2
ResIII
AAA_12
AAA_30
DEAD
AAA_11
RPN6_N
Motif
Other DBs
NCBI-ProteinID:
CAH0436468
LinkDB
All DBs
Position
CNEO:1787680..1789686
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AA seq
668 aa
AA seq
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MGYNLDEYQESSVKAEEKNALIVAAPGSGKTTVIINRVNYLVKQKNILDKNIIVITFTKA
AALNMKKRYFDKFNTTTAPFFGTFHGLFYKMLLKTGGNIDIIDGGIVHKIVSNILNKYFD
EVSEDKVKEAINNISLYKTSRLPLNEFKASISKEIFEEILETYEGYKKENNKYDFDDLCI
KVLELLKSNKNLCSAYQKLFKYILVDEFQDCDEMQIEFLKIINEGHENSLFAVGDEDQCI
YSFRGSKPEYMVSFDEIFGDAKKYYLSVNYRSKQNIVESSKKLIKFNKARNNKEIYFNRE
ELGIIKWFNTYNEKMQAEKLADIIEENKKLGIPYEKNAILYRTNMESMNAIDVLTRRKIP
FTLLDREYNFFEHFICKDIIAYLKLSVNNFDKKSFIQIINKPFRYMSKSNIAYLNNYFKE
ESPFDIIIDKEDTPPFQKKKIDELRKDINYLNKISLSSAISYIVMDLGYIDHLREYSQKF
GQSLDDLEDIIEEFKVAAEGYKTIFEFLAHVDEVKESIEESKKKKDREGVILSTIHGVKG
MEFKNVYIINCCEDTIPHSSSKDTNIEEERRLFYVGITRAIDELYLFSPRNRKGQFKDIS
RFIIEGGFNDLPVDTYGYEIGRRITHKTYGTGIIEELEKDKATIRFDDGEVRSFSLKVLV
DNGLVNKV
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggggtataatcttgatgaatatcaagaaagttctgtaaaagcagaagaaaaaaatgct
ttaatagttgcagcaccgggttctggaaaaacaacagtaataataaatagagttaattat
ttagtgaaacaaaaaaatatattggataaaaatattatagtaataacttttactaaagct
gcagcattaaatatgaaaaaacgttactttgataaatttaatacaacgacagcaccattc
tttggaacgtttcatggactgttttataagatgctcttaaaaacaggaggtaatatagat
attatagatggaggtattgtacataaaatagtaagtaatattttgaataaatattttgat
gaagtaagtgaggataaagtaaaagaagcaataaataatatttccttatataaaacatca
agattaccgttaaatgaatttaaagcttctatttcaaaagaaatatttgaggaaatttta
gaaacatatgaaggatataagaaagaaaataataagtatgattttgatgatttatgcatt
aaagtcttagaacttttaaaaagcaataagaatctatgctcagcataccaaaaattattt
aaatatatactagtagatgagtttcaagattgtgatgagatgcaaatagaatttttaaaa
ataataaatgaaggccatgagaattctctttttgcggtaggggatgaagatcaatgcatt
tattcatttaggggatctaagccagaatatatggtatcttttgatgagatatttggcgat
gcaaagaaatactatttatcagttaattatagaagtaagcaaaatatagttgaaagctct
aaaaaattaataaaatttaataaagcaagaaataataaagaaatttattttaatagagaa
gagttaggaattataaaatggtttaatacgtataatgaaaaaatgcaggctgaaaagctg
gctgatattatagaagaaaataaaaagctaggaataccatatgagaaaaatgcaatttta
tatagaaccaatatggaatctatgaatgctattgatgtactgacaagaagaaagattcca
tttactttattggatcgtgaatataatttttttgaacattttatatgtaaagatataata
gcttacttaaagttaagtgtaaacaattttgataaaaagagttttattcaaataataaat
aaaccatttagatatatgagtaaatcaaatatagcctatttaaataattattttaaagaa
gaaagtccttttgatattataatagataaagaagatacgccgccatttcaaaagaaaaaa
atagatgagcttagaaaagatataaattatcttaataaaatttcgttatcatcagctatt
tcatatattgttatggatttaggatatattgaccacttaagagaatattcacaaaaattt
ggacagagtttggatgatctagaggatattattgaagaatttaaagtagcagcggaaggt
tataaaactatatttgaatttttagcacatgtagatgaagttaaagaaagtattgaggaa
agtaaaaagaaaaaagatagggaaggggttatattaagcacaattcatggcgtaaaagga
atggaatttaaaaatgtttatataataaactgctgtgaagatactatcccacattcatca
agcaaggatacaaacatagaagaagagagaagattattctatgttggaattacccgtgca
atagatgagctttatttattctcaccaagaaatagaaaaggtcagtttaaagatatttcg
agatttataatagaaggtggatttaatgatttgccagtagatacttatggatatgaaata
ggaagaagaataactcataaaacttatggaactggaattattgaagaacttgaaaaagat
aaggctactataagatttgatgatggagaagttagaagtttttctttaaaggtactagtt
gataatggattagttaataaggtataa
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