KEGG   Clostridium neonatale: CNEO_1987
Entry
CNEO_1987         CDS       T08280                                 
Name
(GenBank) Ribonuclease J family protein
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
cnn  Clostridium neonatale
Pathway
cnn03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cnn00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CNEO_1987
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cnn03019]
    CNEO_1987
Messenger RNA biogenesis [BR:cnn03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     CNEO_1987
SSDB
Motif
Pfam: RNase_J_b_CASP RNase_J_C RMMBL Lactamase_B Anti-Pycsar_Apyc1 Lactamase_B_2 PDEase_II Pput2613-deam
Other DBs
NCBI-ProteinID: CAH0436632
LinkDB
Position
CNEO:1942325..1944040
AA seq 571 aa
MENNNIEKKQVKKKRKYIPNRKKVKIIPLGGLGEIGKNITAFEYENEIVVIDCGLSFPDE
ELYGIDIVIPDVTYLINNSHKVKGFFITHGHEDHIGGLPYVLKQINVPIYGTKLTIGLIE
SKLTEHNILSDCTLNVVEPGEIVELDNFKVEFIRNNHSIADSCSIALHTPLGVIVHSGDF
KVDFTPIDNKVMDLARYAQLGKKGVLLLMADSTNAIKPGYTMSEKTVGETLERLFLQATG
RIIVATFASNIHRLQQIVNACEKHNRKIAFSGRSMEKISEVSMELGYLNVPDGMIISLDE
INNYSDERITIVTTGSQGEPMSALTRIASATHRNIQIQKGDMVIISATPIPGNEKSVSNV
INSLTEKGANVIYKAIEDIHVSGHACEQELRLIQALLKPKFFLPVHGEYKQLRAHSKIAQ
DMGVDENKIFILEIGDVFELYKNRGKIAGKVPSGRVLIDGMGIGDVGNIVLRDRKNLSQD
GIITIVTVIDKKNKFIISGPDVITRGFVYVRDSEELINELRNEALRIVGNCLEKNITQWS
EMKNTIRKDVGSYIYSKIKRKPMILPVIVEV
NT seq 1716 nt   +upstreamnt  +downstreamnt
ttggaaaataataatattgaaaaaaaacaagtaaagaagaagcgaaaatatatacctaat
agaaagaaagtaaaaataatcccattaggtgggcttggagaaataggaaagaatattact
gcatttgaatatgaaaatgaaatagtggtaatagactgtggattatcattcccagatgaa
gaattatatggtatagatattgttatacctgatgtaacatatcttattaataatagtcat
aaagttaaaggtttttttataacacatggacacgaagatcatattggaggtttgccttac
gttcttaagcaaattaatgtacctatttatggcacaaagctaacaataggtttgatagaa
agtaaacttactgaacataatattttaagtgattgtacattaaatgttgtagagccaggc
gaaatagttgaacttgataattttaaggtggaatttataagaaataatcatagtatagcg
gatagctgttcaatagcgttacacacaccattaggtgtaattgttcatagtggagatttt
aaagttgactttacaccaatagataataaagttatggatttggctaggtatgcacagctt
gggaaaaaaggagtgctattattaatggcagatagtactaacgctattaagccaggatat
accatgtcggaaaaaacagttggtgaaacattagaaagactatttttacaagcaacagga
agaattatagttgctacatttgcatctaatattcatagattacagcaaatagtcaatgca
tgtgaaaagcacaatagaaaaatagcgtttagtggaagaagtatggagaaaatatcagaa
gtctcaatggaacttggatatttaaatgttccagatggaatgataattagtcttgatgaa
ataaataattattcagatgaaagaataactattgtaactacaggaagtcaaggagaacca
atgtcggctttaacaaggattgcctcagctactcatagaaatatacagatacaaaaaggt
gatatggttataatatctgctactccgattccaggaaatgaaaaatcagtttctaatgtt
ataaattcattaacagagaaaggtgctaatgtaatttataaggcgattgaagatattcat
gtatcagggcatgcttgtgagcaagaattaagacttattcaagcccttcttaaacccaaa
ttctttttacctgttcatggagaatataagcagttaagagctcatagcaaaatagcacaa
gatatgggagtagatgaaaataagatatttatattagaaattggtgatgtttttgaactt
tataaaaatagaggtaaaatagcaggaaaggttccatcaggtagagttcttattgatgga
atgggaataggtgatgttggtaatatagttcttagagataggaaaaatctatcgcaagat
ggcataataactatagttactgttatagataaaaagaataaatttataatatctggccca
gatgtaataacaagaggatttgtttacgtgagagatagtgaagaactaataaatgaatta
agaaatgaagctttgagaatagtgggaaattgtcttgaaaaaaatataactcagtggtca
gaaatgaaaaatacaataagaaaagatgttggatcatatatttattcaaagattaaaaga
aaacctatgattttaccggttattgttgaagtataa

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