Clostridium neonatale: CNEO_1987
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Entry
CNEO_1987 CDS
T08280
Name
(GenBank) Ribonuclease J family protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
cnn
Clostridium neonatale
Pathway
cnn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cnn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CNEO_1987
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cnn03019
]
CNEO_1987
Messenger RNA biogenesis [BR:
cnn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CNEO_1987
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Lactamase_B_2
PDEase_II
Pput2613-deam
Motif
Other DBs
NCBI-ProteinID:
CAH0436632
LinkDB
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Position
CNEO:1942325..1944040
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AA seq
571 aa
AA seq
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MENNNIEKKQVKKKRKYIPNRKKVKIIPLGGLGEIGKNITAFEYENEIVVIDCGLSFPDE
ELYGIDIVIPDVTYLINNSHKVKGFFITHGHEDHIGGLPYVLKQINVPIYGTKLTIGLIE
SKLTEHNILSDCTLNVVEPGEIVELDNFKVEFIRNNHSIADSCSIALHTPLGVIVHSGDF
KVDFTPIDNKVMDLARYAQLGKKGVLLLMADSTNAIKPGYTMSEKTVGETLERLFLQATG
RIIVATFASNIHRLQQIVNACEKHNRKIAFSGRSMEKISEVSMELGYLNVPDGMIISLDE
INNYSDERITIVTTGSQGEPMSALTRIASATHRNIQIQKGDMVIISATPIPGNEKSVSNV
INSLTEKGANVIYKAIEDIHVSGHACEQELRLIQALLKPKFFLPVHGEYKQLRAHSKIAQ
DMGVDENKIFILEIGDVFELYKNRGKIAGKVPSGRVLIDGMGIGDVGNIVLRDRKNLSQD
GIITIVTVIDKKNKFIISGPDVITRGFVYVRDSEELINELRNEALRIVGNCLEKNITQWS
EMKNTIRKDVGSYIYSKIKRKPMILPVIVEV
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
ttggaaaataataatattgaaaaaaaacaagtaaagaagaagcgaaaatatatacctaat
agaaagaaagtaaaaataatcccattaggtgggcttggagaaataggaaagaatattact
gcatttgaatatgaaaatgaaatagtggtaatagactgtggattatcattcccagatgaa
gaattatatggtatagatattgttatacctgatgtaacatatcttattaataatagtcat
aaagttaaaggtttttttataacacatggacacgaagatcatattggaggtttgccttac
gttcttaagcaaattaatgtacctatttatggcacaaagctaacaataggtttgatagaa
agtaaacttactgaacataatattttaagtgattgtacattaaatgttgtagagccaggc
gaaatagttgaacttgataattttaaggtggaatttataagaaataatcatagtatagcg
gatagctgttcaatagcgttacacacaccattaggtgtaattgttcatagtggagatttt
aaagttgactttacaccaatagataataaagttatggatttggctaggtatgcacagctt
gggaaaaaaggagtgctattattaatggcagatagtactaacgctattaagccaggatat
accatgtcggaaaaaacagttggtgaaacattagaaagactatttttacaagcaacagga
agaattatagttgctacatttgcatctaatattcatagattacagcaaatagtcaatgca
tgtgaaaagcacaatagaaaaatagcgtttagtggaagaagtatggagaaaatatcagaa
gtctcaatggaacttggatatttaaatgttccagatggaatgataattagtcttgatgaa
ataaataattattcagatgaaagaataactattgtaactacaggaagtcaaggagaacca
atgtcggctttaacaaggattgcctcagctactcatagaaatatacagatacaaaaaggt
gatatggttataatatctgctactccgattccaggaaatgaaaaatcagtttctaatgtt
ataaattcattaacagagaaaggtgctaatgtaatttataaggcgattgaagatattcat
gtatcagggcatgcttgtgagcaagaattaagacttattcaagcccttcttaaacccaaa
ttctttttacctgttcatggagaatataagcagttaagagctcatagcaaaatagcacaa
gatatgggagtagatgaaaataagatatttatattagaaattggtgatgtttttgaactt
tataaaaatagaggtaaaatagcaggaaaggttccatcaggtagagttcttattgatgga
atgggaataggtgatgttggtaatatagttcttagagataggaaaaatctatcgcaagat
ggcataataactatagttactgttatagataaaaagaataaatttataatatctggccca
gatgtaataacaagaggatttgtttacgtgagagatagtgaagaactaataaatgaatta
agaaatgaagctttgagaatagtgggaaattgtcttgaaaaaaatataactcagtggtca
gaaatgaaaaatacaataagaaaagatgttggatcatatatttattcaaagattaaaaga
aaacctatgattttaccggttattgttgaagtataa
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