Clostridium neonatale: CNEO_2386
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Entry
CNEO_2386 CDS
T08280
Name
(GenBank) Putative ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cnn
Clostridium neonatale
Pathway
cnn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cnn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CNEO_2386
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cnn03019
]
CNEO_2386
03400 DNA repair and recombination proteins [BR:
cnn03400
]
CNEO_2386
Enzymes [BR:
cnn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CNEO_2386
Messenger RNA biogenesis [BR:
cnn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CNEO_2386
DNA repair and recombination proteins [BR:
cnn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CNEO_2386
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HRDC
RQC
DEAD
Helicase_C
RecQ_Zn_bind
HTH_40
ResIII
Helicase_Sgs1
HHH
HMD_N
Motif
Other DBs
NCBI-ProteinID:
CAH0437010
LinkDB
All DBs
Position
CNEO:2318910..2321321
Genome browser
AA seq
803 aa
AA seq
DB search
MNNKALEVLEKYFGYKSFRKGQEQIIAAILKGNDVLGVMPTGGGKSICYQIPALVFEGMT
IVISPLISLMKDQVDTLKEMGIDGEYINSTLSESEETEIYNKIKSSQIKILYVAPERLES
MEFLSVISECSISQIAIDEAHCISQWGHDFRSSYRKIYGFISLLKERPVVTAFTATASDE
VREDIINLLKLNNPKIFITGFDRENLYINIIKGENKNKFLYKYIENNKDVSGIIYAATRK
EVEKIYEDLCKRDFNISYYHGGLSDEKRRENQESFIYDRTNIMVATNAFGMGIDKPNIRY
VIHYNMPRNIESYYQEIGRAGRDGEKSECILLYSPQDVHIQRYLIENSIENPERKNMQYK
KLHQMNDLVFSNDCYRKYLLSYFGEEPNENCNNCSNCLNEGEVVDKTTDAQKVLSCIYRM
KTKFGATILVDVLRGSKNKKVLDLKFNELSTYGIMKDYSSEELKTFINTLISHGFISVFE
GTYPVLGLNDMSRKVLVGEQKVLFKEIKVSKKLSEDNELFELLRRLRFNLASEHNVPPYV
IFGDATLREMASKYPSNREQMLEITGVGGTKYERYGNEFENLIKEYVIDNNIKLENENDK
SSDEKIKNHESDILEVQTDIDLYKSLRSIRNDLAKKANTLPQAILSMNTLKEISGRYPKT
LDELKDISGIGPKKIESYGEIIINEVNNYILKNNIDAVWQEKKRKKVIIDNETRKVDEIA
IDMLKNNIKIDEVSKEIEVSISTILGYVTDYIKEFGENGFNINLNDFYNEEEEETILKAI
NKVGYEKISLIKKNYQIILNMRR
NT seq
2412 nt
NT seq
+upstream
nt +downstream
nt
atgaataataaagcgttagaagttttagaaaagtactttggatataaatcatttagaaaa
ggacaggagcagataattgcagcaatacttaaaggtaatgatgtacttggagtaatgcct
acaggcggtggtaaatcaatatgttatcagatacctgcccttgtttttgaaggaatgact
attgtaatatctccacttatttctttaatgaaagatcaagtagatacattaaaggaaatg
ggaatagacggtgaatatataaatagtacactttctgagagtgaagaaacagaaatatat
aataagattaaaagtagccaaataaaaatactttatgttgcaccagaaagattagaatca
atggaatttttaagcgtgatttcagaatgtagtatctcgcaaattgctattgatgaagca
cattgtatttctcagtgggggcatgattttagaagcagctatagaaaaatatatggattt
atatcattattaaaagagcgacctgttgtaactgcttttactgcaacagcatcagatgaa
gtacgcgaagacataattaatttacttaaattaaataatcctaaaatatttataacaggt
tttgatagagaaaacttatatataaatataataaagggagaaaataaaaataagttttta
tataagtatatagaaaataataaagatgtatctggaattatatatgctgcaacaagaaaa
gaagtagagaaaatatacgaggatttatgtaaaagagattttaatatatcatattatcat
ggtggattaagtgatgaaaaaagaagagaaaaccaagaaagctttatttatgatagaact
aatataatggtagctacaaatgcttttggtatgggaatagataaaccaaatataagatat
gtaattcattataatatgccaagaaatatagaaagttattatcaggaaataggaagagca
ggaagagatggtgaaaagtctgaatgtatacttttatattcaccacaggacgttcatata
caaagatatttaatagaaaattcaattgaaaatcctgaaagaaaaaatatgcagtataaa
aagcttcatcaaatgaatgatttagtattcagtaatgattgttatagaaaatatttgtta
tcatattttggcgaagaaccaaatgagaattgcaataactgtagtaattgtctaaatgaa
ggtgaagttgtagataaaactactgatgcacaaaaggtgctttcatgtatatatagaatg
aaaacaaaatttggtgctacaattcttgtagatgtattaagagggtcaaagaataaaaaa
gttttagatttgaaatttaacgaattatccacttatggaataatgaaggactattcaagt
gaagaattaaaaacatttataaatactcttatttcgcatggatttatatctgtttttgaa
gggacttatcctgttcttggattaaatgatatgtctagaaaagttcttgttggagagcaa
aaagtattatttaaagaaattaaggtatcaaagaaattaagtgaagataatgaattgttt
gaattattaagaagacttagatttaacttagcaagtgagcataatgtaccaccatatgtt
atttttggtgatgcaactttacgtgaaatggcttctaaatatccaagtaatagagaacag
atgcttgaaattacaggggttggtggaactaaatatgaaagatacggaaatgaatttgaa
aatttaattaaagaatatgttattgacaataatataaaacttgaaaatgagaatgataaa
agtagtgatgaaaaaataaaaaatcatgaaagtgatatattagaagttcaaacagatata
gatttatataaaagcttaagaagtataagaaatgatttagctaaaaaagctaatacatta
ccacaagcaattttgagtatgaatactctaaaagaaattagtggaaggtatccaaaaaca
ttagatgagctaaaagatatatcaggaatcggtcctaaaaaaatagagtcatatggggag
ataataatcaatgaagttaataattatatattaaagaataatatagatgctgtttggcag
gagaaaaaaagaaagaaagtaataatagataatgaaactagaaaagtagatgaaatcgca
atagacatgttaaaaaataatataaaaatagatgaagtgtcaaaagaaattgaagtttca
atttctacaattttaggatatgttacagattatattaaagaatttggtgaaaatggtttt
aatataaatttaaatgatttttataatgaagaggaagaagaaactatattaaaggcaata
aataaagtgggatatgaaaaaataagtttaattaaaaagaattaccagattatattaaat
atgaggcgataa
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