Clostridium neonatale: CNEO_2418
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Entry
CNEO_2418 CDS
T08280
Symbol
dbpA
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cnn
Clostridium neonatale
Pathway
cnn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cnn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CNEO_2418 (dbpA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cnn03019
]
CNEO_2418 (dbpA)
03009 Ribosome biogenesis [BR:
cnn03009
]
CNEO_2418 (dbpA)
Enzymes [BR:
cnn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CNEO_2418 (dbpA)
Messenger RNA biogenesis [BR:
cnn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CNEO_2418 (dbpA)
Ribosome biogenesis [BR:
cnn03009
]
Prokaryotic type
rRNA helicases
CNEO_2418 (dbpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
GTP_EFTU_D2
Motif
Other DBs
NCBI-ProteinID:
CAH0437042
LinkDB
All DBs
Position
CNEO:2358306..2359748
Genome browser
AA seq
480 aa
AA seq
DB search
MNNNFNEYNLSDELIKAINDLGYKSPSEVQDKVIPEIMLNKDLIVKSQTGSGKTAAFAIP
LCEKCDWDENLPQVLVLSPTRELAVQVNEDFLNIGRYKRLKSVAIYGKSPMNEQIRTLKQ
KTHIVVGTPGRILDHIDRESLKIEKIKYLVIDEGDLMLNMGFINQVEGILRRLPKKIVKL
LFSATIPNEIKELCEKHMQRPVSITIKNQNLISNNIEHNLYYINCDEKLESLNSILINEK
PETVVIFGRTKESVDKIFDYLKCKKYSVGKIHGGMMQKERLDAMSDFKQGNFRILVATDI
AARGIDVDNLTHVINFELPVEKESYVHRIGRSGRAGAKGKAISFCTKENDRYLNLIEEYI
GFKIPVKLLPSNEEINKEKDEGLNILKSKPNKKKEKGKVVNSKITKIYLNGGKKKKLRAG
DIVGAICNIEGVTSDDIGIIDVQDNVSYVDILNNKGKIVIDNLKNTTIKGKKLKVEKARN
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgaataataattttaatgaatataatttgagtgatgaattaataaaagcaattaatgat
ttaggttataaatcaccttcagaagttcaggataaagtaatacctgaaattatgcttaac
aaagatcttatagttaagtctcaaacaggttctggaaaaacagcagcatttgcaattccc
ttatgtgaaaaatgtgattgggatgaaaatttacctcaagtgttagtattaagcccaaca
agagagttagcagttcaagtaaatgaagattttttaaatataggaaggtacaaaagacta
aaaagtgtagcaatatacggtaaatcgccaatgaatgagcaaataagaactttaaagcaa
aaaacccatatagtagttggaacacctgggagaatattagatcatatagatagagaaagt
cttaagatagaaaaaatcaaatatttagtaattgatgaaggtgaccttatgcttaatatg
gggtttattaatcaagtagaaggtatactaagaagactgcctaaaaaaatagtcaaatta
ctattctcagcaactattccaaatgaaataaaagaattatgtgaaaaacatatgcaaaga
ccagtaagcataactattaaaaatcaaaatcttattagtaataatatagagcataattta
tattatataaattgcgatgaaaagttagaatcattaaacagtattttaataaatgaaaag
cctgaaactgttgttatttttggaagaacaaaagaaagtgtagataagatttttgattat
ttaaaatgtaaaaagtatagtgtagggaagattcatggcggcatgatgcaaaaagaaaga
ttggatgccatgagtgattttaaacagggaaatttcagaattttagtagctacagatatt
gcagcaaggggaatagatgttgataacttaacacatgttataaattttgagcttccagta
gaaaaagaaagttatgtacatagaatcggtagaagcggacgtgctggtgcaaaaggtaaa
gccatatctttttgcactaaagaaaatgatagatatttaaatctgattgaagaatatata
ggatttaagattcctgttaaattacttccaagcaatgaagaaataaataaagaaaaagat
gaaggtttaaatatattaaaatcaaaacctaataagaaaaaggaaaagggaaaggtagta
aactctaaaataacaaagatatatttaaatggtggaaaaaagaaaaaattaagagctggt
gatatagtaggagcaatttgcaatatagaaggagttacatctgatgatattggaataatt
gatgttcaggataatgtatcatatgtagatatcttaaataacaagggaaagattgttatt
gataacttaaaaaatacaactataaaaggtaaaaagcttaaagttgagaaggctcgaaat
tag
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