Clostridium neonatale: CNEO_3748
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Entry
CNEO_3748 CDS
T08280
Symbol
sigA
Name
(GenBank) RNA polymerase sigma factor
KO
K03086
RNA polymerase primary sigma factor
Organism
cnn
Clostridium neonatale
Pathway
cnn02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cnn00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CNEO_3748 (sigA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cnn03021
]
CNEO_3748 (sigA)
Transcription machinery [BR:
cnn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CNEO_3748 (sigA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
Exonuc_VII_L
Not3
HHH_RecD2
Motif
Other DBs
NCBI-ProteinID:
CAH0438298
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All DBs
Position
CNEO:complement(3696262..3697371)
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AA seq
369 aa
AA seq
DB search
MEQKVKGEAIKGKSEKDKNAKMNEVRELLERGKKNGSLTYKEIMEAMDHIDLTPEQIEKI
YEALEAMSVEIIGDDVNEAEELNEDLDLSVPEGIAIDDPVRMYLKEIGKVPLLSSEQEIE
YAKQIEEGNPKAKKKLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYRK
GYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQELGRDPFPEEI
SKVMDLPVDKVREIQKIAQEPVSLETPIGEEEDSHLGDFIPDDEAPAPAEAAAFTMLKEQ
LINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSR
SKKLKDYLD
NT seq
1110 nt
NT seq
+upstream
nt +downstream
nt
atggaacaaaaagttaaaggtgaagcaataaagggaaagtcagaaaaagataaaaatgca
aaaatgaatgaagtaagagaacttcttgaaagaggtaaaaagaatggttcattaacatat
aaagaaataatggaggcaatggatcatattgatttaactccagaacaaatagaaaagata
tatgaagcattagaagcaatgagtgtagagataattggtgatgatgttaatgaggcagaa
gaattaaatgaagatttagatttatcagttccagaagggatagcaattgatgatccggtt
agaatgtatttgaaagaaatcggaaaggtgccattattatcttctgaacaagaaatagaa
tatgcaaaacaaattgaagaaggtaatccaaaagctaaaaagaaactagctgaagcaaac
ttgagattggttgtaagtatagccaaaagatatgttggaagaggaatgctatttctggat
ttaattcaagaaggtaacttaggtcttataaaagctgtagagaagtttgattatagaaaa
ggatataaattctcaacttatgctacatggtggattagacaggcgataacaagagctatt
gcagaccaagcaagaacaattagaattccagttcatatggttgaaactataaataagctt
ataagagtacaaagacaattattgcaagaacttggtagagatccattcccagaagaaata
tcaaaagttatggatttaccagtagataaggttcgtgaaattcaaaaaatagcacaagaa
ccagtttcactagaaactcctataggtgaagaagaagattctcatttaggagactttatt
ccagatgatgaagcaccagcaccagctgaagcagcagcatttacaatgcttaaagaacaa
ttaataaatgtgttagatacactaactcctagagaagaaaaagtattaagattaagattt
ggtcttgatgatggaagagcaagaactcttgaagaagtaggtaaagaatttaatgtaaca
agagaaagaataagacaaattgaagcaaaagcattaagaaagctaagacatccatcaaga
agtaaaaagttaaaagattatttagattaa
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