Clostridium novyi: NT01CX_1020
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Entry
NT01CX_1020 CDS
T00431
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cno
Clostridium novyi
Pathway
cno03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cno00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NT01CX_1020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cno03400
]
NT01CX_1020
Enzymes [BR:
cno01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NT01CX_1020
DNA repair and recombination proteins [BR:
cno03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NT01CX_1020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
SNF2-rel_dom
UB2H
AcetylCoA_hyd_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ABK61861
UniProt:
A0PXL4
LinkDB
All DBs
Position
140913..144425
Genome browser
AA seq
1170 aa
AA seq
DB search
MRLKGLMEPLLDNIQFQNTIKSIEDGKYPIEITGLSESGRAYFINGIYEQEDKSIFIFTN
SDVEAKNLYEDLSLYVPNVYYFPNKEVVFYNVYAISGDLRWERLKVIREMLKKGKKVIVA
SIETLASTYISPELYKKYTLKVSVGDVIDIEELSEKLIQGGYQRTSIVEGKGEFSIRGGI
IDVYSPISSVPYRIELFGDEVDSIRSFNTESQRSIEKSKSIEIFPAKEMILTKENIDMGY
NSIKEDLQKAKEKLVDDRELLDNLEKNTISNLESLKETWSFENIDSFTPYFYENTATLLD
YMNDSLVFVTDVQRSLGKLDTVYFEFIENYKQLLERGTILSKQLELLVSKEDILEKIQKS
NIVTLNIISKEMDVLKSKHKESFNQTILNSFGGKLDFLIEEINSKKSQGYKILILSGTRP
RGERLVDALRDYDIESAYKDVVDNIEFGEVVITFGNQSKGFEYPELKLCVISDKDFFGKS
RKRIKRKNKKGVGKIKSFDELKPGDYVVHTNHGIGVYKGIKQLEVQGHKKDYLELSYNAG
DTLYVPVEQLDLVQKYIGSEGKSPKVNKLGGSEWTKAKKKVRKAINEIAEELVKLYAIRS
TLKGHKFGKDTVWQKQFEDEFPYDETPDQLTAIQEIKEDMESSKAMDRLLCGDVGYGKTE
VAIRAAFKSVMDGKQVALLVPTTILAEQHYTNLVKRFCDFPVKIDMISRFKTSAQVKAIL
KEVKAGNVDVLIGTHRILQKDVEFKDLGLLIVDEEQRFGVTHKEKIKNLKKNVDVLTLTA
TPIPRTLHMSLTGIRDISVIETPPEERYPVQTYVVEFNDQLILDAITREMDRGGQVYFVY
NRVGSIKEMAAYLAKLVPDAKVGIAHGQMPERELEKVMFDFMKKEYDILVCTTIIETGLD
IQNANTMIIYDADKFGLSQLYQLRGRVGRTNRMAYAYLTYKKDKVLTEVAEKRLKAIKDF
TELGSGFKIAMRDLEIRGAGNLIGAAQHGHMASVGYDLYCRMLEDTIKLVKGEIDKEPIE
TTVDLKVDAYIPGNYIKDEVQKIEVYKKIANIDSKESMMDIQEELEDRFSDIPPSVDNLI
NIAYIKTIANSLGIVEVKEKPNEVIIKFQNKEYINPKLIKGIMDKYSKNVMFKLGDEPSL
GYNTRKIKKEELIMHLREFLQYLQSIVEIK
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
atgaggttaaaggggcttatggagcctttattagataacattcaatttcaaaatacaata
aaaagtatagaagatgggaaatatcctattgagataacaggactttcagagtcaggaaga
gcttactttataaatggtatatatgaacaggaagacaaatctatatttatatttactaat
agtgatgttgaagctaaaaatttatatgaagatttatctttatatgtacctaatgtatat
tactttcctaataaagaggttgttttttataatgtttatgcaatctctggagatttaaga
tgggaaagacttaaagtaataagggagatgttaaagaagggcaaaaaggtaatagtagca
tctatagaaactttagcatcaacttatatatctcctgaattatacaaaaagtatacatta
aaagtgtctgttggtgatgttattgatattgaagaattgagtgaaaaattaatacaaggt
ggttatcaaagaacaagcattgtagaaggtaaaggagaattttcaataagaggtggaatt
attgatgtgtattccccaatatcatctgttccatatagaatagagttatttggagatgaa
gtagattccataagaagtttcaatacagaatcacaaagaagtatagagaagagcaaatct
attgaaatatttcctgccaaagaaatgatacttacaaaagaaaatatagacatgggatac
aattctataaaagaagatttacaaaaggctaaagaaaaactagttgatgatagagagtta
ttagataatttagagaagaatacaatatctaatttagaatctttaaaagaaacatggagc
tttgaaaatatagatagttttacaccatatttctatgaaaacacggctacattactagat
tatatgaatgattcacttgtatttgtaactgatgtacaaagatcacttggaaaactcgat
acagtatactttgaatttatagagaattataaacagcttttagaaagaggtactattctt
tcaaaacaactagaacttttagtatcaaaggaagatatattagaaaaaatacaaaaatct
aatattgtaaccttaaatataatatctaaagagatggatgtattaaaatctaaacataaa
gagagttttaatcaaacaattttaaattcctttggaggaaaactagactttttaatagaa
gaaataaatagtaagaaaagtcaaggatacaagatattaatattaagtggtactagacct
agaggagaaagactagttgatgcattaagagattatgatattgaaagtgcttataaagat
gttgtagacaatattgagtttggagaagttgtaataacatttggaaatcaatctaaagga
tttgagtaccctgagttaaagctttgtgttatatcagataaagactttttcggtaaatct
agaaaaagaattaaaagaaaaaataaaaaaggtgtaggcaagattaagagctttgatgag
ttaaagccaggagattatgtagttcacacaaatcatggtataggtgtttataagggcatt
aaacaattagaggtacaaggtcataaaaaagattatttagaacttagttataatgctgga
gatacactatatgttcctgtagaacaattagacttagttcaaaagtatataggaagtgaa
ggaaaatctcctaaggtaaataagcttggcggaagtgaatggacaaaagctaaaaagaaa
gttagaaaagctataaatgaaatagctgaagaactagtaaaactttatgccataagatca
accctaaaagggcataagtttggaaaagatacagtatggcaaaagcaatttgaagatgag
ttcccatatgatgaaactccagaccaacttactgctattcaagaaataaaagaagacatg
gaatcttcaaaggctatggataggcttttatgtggagatgttggctatggtaagactgaa
gttgcaataagagctgcttttaaatctgtaatggatggaaaacaagtggcattattagtt
cctacaacaattttagcagaacaacattatactaacttagtaaaaagattttgtgacttc
ccagttaaaatagatatgataagtagattcaaaacatccgctcaagttaaagctatatta
aaagaagttaaagctggaaatgttgatgttttaattggaacacatagaatactacaaaag
gatgtggaatttaaggatttagggttattaatagtagatgaagaacaacgttttggtgtt
acccataaagaaaagataaaaaatctaaagaagaatgttgatgtattaacattaactgct
acaccaataccaagaacacttcatatgtcacttacaggtattagagatattagtgttata
gaaacgccaccagaagaaagatatccagtgcaaacttatgtagtagaatttaatgatcag
cttatattagatgccataactagagaaatggatagaggcggtcaagtatactttgtttac
aacagagttggttctataaaagaaatggcggcatatcttgcaaagttagttccagatgca
aaggttggaattgcacatggacaaatgcctgaaagagaacttgaaaaagtcatgtttgat
tttatgaagaaagaatacgatatattagtatgcacaactataatcgaaacaggattagat
attcaaaatgctaatactatgataatttatgatgcagataaatttggactatctcaactt
tatcaacttcgtggtagagttggaagaacaaatagaatggcttatgcttatttaacatat
aaaaaggataaggtattaactgaagttgcagaaaagagattaaaggcaattaaggatttt
acagagcttggatcaggatttaaaattgccatgcgagatcttgaaataagaggtgctgga
aacttaataggagcagcacagcatggacatatggcatctgtaggatatgatctatactgt
agaatgcttgaagatacaataaagcttgtgaaaggagagatagataaggagcctatagaa
actacagttgatctaaaggttgatgcttatataccaggtaactacataaaagatgaggtt
caaaagatagaagtatataagaaaattgcaaatatagattctaaagaaagcatgatggat
atacaagaagaattagaagataggttctcggatataccaccatctgtagacaatcttatt
aatattgcctacataaaaactattgcaaacagcctaggaattgtagaagtgaaggaaaaa
ccaaatgaggtaattataaaattccaaaacaaagaatatataaatccaaaattaataaaa
ggtataatggataagtatagcaagaatgttatgtttaagttaggagatgagccttctcta
ggctacaatacaagaaaaataaagaaggaagaattaataatgcatttaagggaatttcta
caatatttacaaagtatagtggaaatcaaataa
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