Clostridium novyi: NT01CX_1108
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Entry
NT01CX_1108 CDS
T00431
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cno
Clostridium novyi
Pathway
cno03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cno00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NT01CX_1108 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cno03021
]
NT01CX_1108 (rpoC)
03400 DNA repair and recombination proteins [BR:
cno03400
]
NT01CX_1108 (rpoC)
Enzymes [BR:
cno01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NT01CX_1108 (rpoC)
Transcription machinery [BR:
cno03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NT01CX_1108 (rpoC)
DNA repair and recombination proteins [BR:
cno03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NT01CX_1108 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
DUF3037
DUF7762
TENA_THI-4
Motif
Other DBs
NCBI-ProteinID:
ABK62005
UniProt:
A0PXT9
LinkDB
All DBs
Position
226787..230344
Genome browser
AA seq
1185 aa
AA seq
DB search
MWREDLPLIELNNFEALQIGLASPEQIREWSRGEVKKPETINYRTLKPEKDGLFCERIFG
PIKDWECHCGKYKRVRYKGIVCDRCGVEVTKSKVRRERMGHIELAAPVSHIWYFKGIPSR
MGLILDMSPRSLEKVLYFASYVVLDPKETPLLKKQLLSEKEYRESVDKYGEEAFDAEMGA
EAVKKLLAEIDLEQLSKELKEALKTSTGQKKVRTIRRLEVVESFRKSTNRPEWMIIDVIP
VIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKKLLDLGAPDIIVRNEKRMLQEAV
DALIDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKM
YQCGLPKEMALELFKPFVMKKLVESGAAHNIKSSKKMVERVMPQVWDVLEEVISEHPVLL
NRAPTLHRLGIQAFQPVLVEGRAIKLHPLVCTAYNADFDGDQMAVHVPLSVEAQAEARFL
MLAANNILKPSDGKPVCVPTQDMILGSYYLTLDKDGVKGEGKIFSNPDEVMMAYQTGAIN
IHAKIKVRMTKEKDGKIISGIIETTPGKLIFNDSIPQDLGFVDRSNPENEFKLEIDFLVT
KKNLGKIIDKCYTKYGATETSTMLDKIKARGYHYSTIGAITISVSDMTVPESKNRLLSDT
DLAVEKIEKMYRRGFISEDERYERVIEKWTQTTEDVANALMDNLDRFNPIFMMADSGARG
SKSQIKQLAGMRGLMANPSGKIIELPIRASFREGLDVLEYFISTHGARKGNADTALKTAD
SGYLTRRLVDVSQDVIVREEDCGSTHGYEVSEIKEGNEVIETLTERLTGRYSIEDIVDPQ
TGEVIVPADTYMNADLAEKVEKHGVKKVNIRSVFTCKSKHGVCAKCYGMNMATANKINIG
ESVGIVAAQSIGEPGTQLTMRTFHTGGVAGADITQGLPRVEELFEARKPKGLAIITEVAG
TVKLEETKKKRIVHVIDDEGVDKSYDIPFGSRIKVSNGSRIEAGDEITEGSVNPHDILAI
KGPKEVKNYLLSEVQKVYRLQGVDINDKHLEVVVRQMTRKVKIKESGDTELLPGTLVDVF
DFEEVNEKIRQQGGEEATGDIALLGITKAALATDSFLSAASFQETTRVLTDAAIKGKSDP
LLGLKENVIIGKLIPAGTGMMRYRSIKLNTDKEENDEELVNVDEA
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
atgtggagggaggatttacccttgatagagttaaataattttgaggcattgcaaattggt
ttagcttcaccagagcaaataagagaatggtcaagaggggaagttaaaaaacctgaaact
attaattataggactttaaaacctgaaaaagacggattgttctgcgaaagaatatttgga
cctataaaagattgggaatgtcattgtggtaaatacaagagagtaagatataaaggtata
gtatgtgatagatgtggagtagaggttacaaaatcaaaagtaagacgtgagagaatgggg
catatagaacttgctgccccagtatcacacatatggtacttcaaaggtataccatctcgt
atgggacttatacttgatatgtcaccaagatctttagaaaaagtattatactttgcatca
tatgttgttttagatccaaaagagactccactattaaagaagcaattacttagtgaaaaa
gagtacagagaaagcgtcgacaaatatggagaagaagcttttgatgctgaaatgggtgcg
gaagcagtaaaaaaacttttagctgaaatagatttagaacaactatctaaagaattaaaa
gaagctttaaaaacaagtacaggtcaaaagaaagtaagaactataagaagacttgaagta
gttgaatcatttagaaaatcaactaatagacctgaatggatgattatagatgttatacca
gtaatccctcctgatttaagacctatggttcaattagatggaggaagatttgcaacatcg
gatctaaatgatttatatagaagagttataaacagaaataacagattaaagaagctttta
gatttaggtgctccagacataatagtaagaaatgaaaagagaatgctacaagaagctgta
gatgctcttatagataatggtagaaggggaagaccagttacaggaccaggaaacagacct
ttaaaatcattatcagatatgcttaaaggtaaacaaggtagattcagacaaaatctactt
ggaaaacgtgttgactactctggacgttcggttatcgttgtaggaccagaattaaagatg
tatcaatgtggtcttccaaaggaaatggcacttgaattattcaagccatttgttatgaaa
aaacttgttgaaagtggagcagctcataatattaagagttctaagaaaatggttgaaaga
gttatgccacaagtatgggatgtacttgaagaagttatatctgagcatcctgtattatta
aaccgtgctccgactcttcacagactaggaattcaagcattccaaccagtattagttgaa
ggaagagcaataaaacttcatccattagtatgtacagcatacaacgccgacttcgatgga
gaccaaatggctgtgcacgtacctttatcagttgaagcacaagcagaagctagattctta
atgcttgcagcaaataatatattaaaaccttctgatggtaaaccagtttgtgtacctact
caggatatgattttaggttcttattatttaacacttgataaagatggagttaaaggagaa
ggaaaaatattctctaacccagatgaagttatgatggcatatcaaactggtgctataaac
attcacgctaagataaaagttagaatgactaaagaaaaagacggaaaaatcattagcgga
ataattgaaactacaccaggaaaattaatattcaacgattcaataccacaagatttagga
tttgtagatagaagcaatcctgaaaatgaatttaagttagaaatagattttctagtaact
aagaaaaacttaggaaagataatagataaatgttatacaaaatatggtgcaactgaaaca
tctacaatgctagataaaattaaggcaagaggataccattattcaactataggagctata
acaatatcagtatctgatatgacagttccagaatctaaaaacagattgctatctgataca
gacttagctgtagaaaagatagaaaagatgtacagaagaggattcatatctgaagatgaa
agatatgaaagagtaattgaaaaatggactcaaacaactgaagatgttgccaatgcactt
atggataatctagatagatttaatccgatcttcatgatggctgactcaggagccagagga
tctaagtctcagatcaagcagcttgctggtatgagaggacttatggctaacccatcaggt
aagattatcgagttaccaatcagagcatcattcagagaaggtcttgacgtattagagtac
ttcatatctactcacggtgctagaaaaggtaacgccgatacagcacttaaaacagctgac
tcaggatacttaacaagaagacttgttgatgtaagccaagatgttatagttagagaagaa
gattgtggatcaacacacggatacgaagtttctgaaataaaagaaggaaatgaagttatc
gaaacattaactgaaagacttacaggaagatattcaatagaagatatcgtagatcctcaa
acaggtgaagttatagtacctgcagatacttacatgaatgcagatttagctgaaaaagtt
gaaaaacatggagttaagaaagttaacattagatctgtatttacatgtaaatcaaaacac
ggcgtttgtgctaagtgttatggtatgaacatggcaacagccaataagataaacattgga
gaatctgttggtatagttgcagctcaatctatcggagaacctggtactcagcttacaatg
agaacattccacacaggtggtgttgctggagcggatatcactcaaggtcttcctagagtt
gaggaactttttgaagctagaaaaccaaaaggacttgcaattataacagaagttgctggt
actgttaaattagaagaaactaagaaaaagagaattgttcatgtaatagatgatgaaggt
gtagataagagctatgatataccatttggatcaagaataaaggtttcaaatggtagcaga
atcgaagccggagatgaaattactgaaggatcagttaatccacatgatattttggcaata
aaaggacctaaagaagttaaaaattacttgttgtcagaagtacaaaaggtatatagacta
caaggtgttgatatcaacgacaagcacttagaagttgttgtaagacaaatgactagaaaa
gttaaaataaaagaatctggagatactgaattattaccaggaactttagtggatgtattt
gatttcgaagaagtaaatgaaaaaatacgccaacaaggtggagaagaagctacaggagat
atagctttacttggaataactaaagcggctcttgcaacagattcattcttgtcagcagca
tcattccaagaaactacaagagtacttactgatgcagctataaaaggtaagagtgaccca
ttattaggtttaaaagaaaatgtaataataggtaaattaataccagctggaacagggatg
atgagatatagatcaataaaattaaatacagacaaagaagaaaatgacgaagaattagta
aatgttgacgaagcttag
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