Clostridium novyi: NT01CX_1296
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Entry
NT01CX_1296 CDS
T00431
Symbol
dnaE
Name
(GenBank) DNA polymerase III, alpha chain
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
cno
Clostridium novyi
Pathway
cno03030
DNA replication
cno03430
Mismatch repair
cno03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cno00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NT01CX_1296 (dnaE)
03430 Mismatch repair
NT01CX_1296 (dnaE)
03440 Homologous recombination
NT01CX_1296 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cno03032
]
NT01CX_1296 (dnaE)
03400 DNA repair and recombination proteins [BR:
cno03400
]
NT01CX_1296 (dnaE)
Enzymes [BR:
cno01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NT01CX_1296 (dnaE)
DNA replication proteins [BR:
cno03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NT01CX_1296 (dnaE)
DNA repair and recombination proteins [BR:
cno03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NT01CX_1296 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
tRNA_anti_2
HHH_3
HROB
Motif
Other DBs
NCBI-ProteinID:
ABK61245
UniProt:
A0PYC7
LinkDB
All DBs
Position
422141..425644
Genome browser
AA seq
1167 aa
AA seq
DB search
MKGQKFVHLHTHTEYSLLDGSGKIGGLIERAKELGMDSLAITDHGTMFGCVDFYKKAKEA
GIKPIIGSEIYVASKSMNIKRNDRENKNHHLVLLVKNEIGYKNLMKIVSKAAIDGFYYKP
RVDHEYLREHSEGLIALSACLAGEVSYNLLNGTKEKAREVALFYKDIFKDGFYLELQYHG
IDKQLRVNEMLIELSRELDIPLVATNDVHYIKKEDAKSHDVLLCIQTGKTLDDTDRMRYE
PQNFYLKSPEEMYDTFSYVPEALENTVKIAEECNFDYVFHESKLPNFPLPESKDHFEYMK
ELCYKGLKVRYPEITPELKERLEYELGVIKQMGYVDYFLIVWDFFRFSHEKGIMTGPGRG
SAAGSLVAYTLGITKIDPIKYNLIFERFLNPERVSMPDIDSDFCYERRGEVIDYVVEKYG
KDNVSQIVTFGTMAPRACIRDVGRAMNYSYAEVDRIAKMIPTVLGITIDKALEMNPELKE
AYDIDSRVKELIDVARDLEGLPRHTSTHAAGVVIASQPLVNYVPLSKNEEAIVTQFTMTT
LEELGLLKMDFLGLRTLTVIRDAIDLVKKKTGTEIDLDKINFEDENVYAMLGKGKTVGVF
QLESAGMTNFMKELKPESLEDIIAGISLYRPGPMAEIPKYIKNKNNPKDIEYLTPKLEPI
LNVTYGVMVYQEQVMQIVRDLAGYSMGRSDLVRRAMSKKKHKVMEEERKNFIYGIEDEKG
NVIVPGCLRNGISEEVANKIYDQMMDFASYAFNKSHAAAYAVVAYYTAYLVYYYPTEFMA
AILNSVRGNSDKVAAYIRAAKQMEIEVLPPKINKSFGKFTVQNGKIRFGLSAIKNVGENV
VDNIAKVREEKGEFNSFVDFCNKISSGSINKRMVESLVKAGAFDCFGIYRSQILAVYEKI
IDSVVNQRKKNIDGQMSLFGSFDDEFKDTEIKYPAIDEFDKKSKLAMEKEMTGLYLTGHP
LEDYEEVLKNRTSAKTTDIIVDESLEEELIDEVTLHIEEQNSKIKDGDKVIIGGLITNVT
RKITRTNSMMAFITLEDLYSSIEVIIFPKTLEQFNKIIMEDEIVLIKGRVTKREDEQPKI
ICDYIERVFNFSSKKLYIQIENKKMLSQTKSDIKKIAILNNGNIPIYICTKEERKKFLIS
REFWINENEDVLKIIKQKYGEENVKLL
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggacagaagttcgttcatttacatacccatacagaatatagtctgttagatggt
tccggtaaaattggtggattaatagaaagagcaaaagaattaggtatggatagtttagca
ataacggatcatggaactatgtttggatgtgtagatttttataaaaaagctaaagaagct
ggaataaaacctattatagggtcggaaatatatgtagcttcaaagtccatgaatattaaa
agaaatgatagagaaaataaaaatcatcatttagttcttttagtaaagaatgaaattgga
tataaaaatcttatgaaaatagtatcaaaagcagctatagatggattttattataaacca
agagtagatcatgaatatttaagggaacatagtgaaggacttatagcactaagtgcttgt
cttgcaggagaagtttcctataatttattaaatggaactaaagaaaaagcaagagaggtt
gctttattttataaagatatatttaaagatggcttttatttagaacttcaatatcatgga
atagataaacaacttagagtaaatgagatgttaatagaattatcaagggagttagatatt
ccactagttgcaacaaatgacgttcactatataaaaaaagaagatgcaaaatctcatgat
gtattactttgcattcaaacaggaaaaacattagatgatacagatagaatgagatatgaa
cctcaaaacttttatttaaaatcacctgaggaaatgtacgatactttttcatatgtacca
gaggctttagaaaatacagttaaaatagctgaagagtgtaattttgattatgtatttcat
gagtctaaacttccaaacttcccacttccagaaagtaaggatcattttgaatatatgaaa
gagttatgttacaagggacttaaagttagatatccggaaataactccagagttaaaggaa
agactagaatatgaacttggggttataaagcaaatggggtatgtagattatttcttaatt
gtatgggacttttttagattttctcatgaaaaaggaataatgacaggtccaggaaggggt
tcagcagcagggtcccttgttgcctacactttaggaattacaaagatagacccaattaaa
tataatttaatatttgaaagatttttaaatccagaacgtgtatctatgcctgatatagat
tcggatttttgttacgaaagacgtggagaagttattgattatgtagttgaaaagtatgga
aaagataatgtatctcaaattgttacatttggaacgatggctcctagagcttgtataaga
gatgttggaagagcaatgaattattcttatgcagaagtagatagaatagctaaaatgatt
ccaacggtgcttggtataacaatagataaagcattagaaatgaatccagagttaaaagaa
gcttatgacattgatagtagggtaaaagaacttatagatgtagcaagagatcttgaggga
ctaccaagacatacatcaacacatgcagctggtgtagttatagcatcccaaccacttgtt
aattatgtgccactttctaaaaatgaagaagcaatagttactcaatttacaatgacaaca
cttgaggaacttggacttttaaaaatggactttttaggacttagaactttaacagttata
agagatgcaatagatcttgttaagaaaaagactgggactgaaatagacctagataaaata
aatttcgaagatgaaaatgtatatgcaatgcttggaaaaggaaagacggttggtgttttc
caattagaatcagctggaatgacaaacttcatgaaagagcttaaaccagaaagcttagaa
gacataatagctggaataagtctttacagaccaggtcctatggcggaaataccaaagtat
ataaaaaataaaaacaaccctaaagatatagaatatttaacacctaagcttgaaccaata
ttaaatgtaacttatggagttatggtgtatcaagagcaagttatgcaaatagttagagat
cttgcaggatattctatgggaagaagtgatttggttcgtcgtgccatgtctaaaaagaaa
cataaagtcatggaagaagaaagaaaaaactttatatacggcattgaagatgaaaaagga
aatgtaatagtaccaggatgcttaagaaatggtattagtgaagaagttgcaaataaaatt
tatgatcaaatgatggactttgcaagttatgcatttaataaatcccatgctgcggcatat
gcagttgtagcctactacacagcttatttggtttattattatccaacagaatttatggcg
gcgattttaaatagtgtaagaggaaatagtgataaagttgcagcttatataagagcagca
aaacaaatggaaatagaagtactgcctcctaagataaataaaagttttggtaaatttact
gttcaaaatggtaaaatacgctttggattatctgctataaaaaatgtaggtgaaaatgta
gttgataatatagcaaaggttagagaggaaaagggagaatttaattcatttgtggacttt
tgcaacaaaatttcatcaggaagtataaataagagaatggttgaaagcttagttaaagca
ggagcctttgattgttttggaatttaccgttcacaaattttagctgtgtatgaaaaaata
atagattctgtagtaaatcaaagaaagaaaaatatagatggacaaatgagtttatttgga
agttttgatgatgaatttaaagatacggaaataaaatatcctgccatagacgagtttgat
aaaaaaagtaaattagcaatggaaaaagaaatgacaggtctatatttaacaggtcatcca
ctagaagattatgaagaagtactaaaaaatagaactagtgcaaaaactactgacattata
gtagatgaatcattagaagaagaacttatagatgaagtaactcttcatattgaagaacaa
aactcaaaaataaaagatggcgataaagtaataataggtggacttatcactaatgtaact
agaaaaataacaagaacaaatagcatgatggcttttataactttagaagatttatatagt
tctattgaagttataatattcccaaaaactttagaacagttcaataaaataataatggaa
gatgaaattgtactaataaagggaagagttacaaagagagaagatgaacaacctaaaatt
atttgtgattatatagagagagtatttaatttctcatcaaaaaaactttatattcaaatt
gaaaataaaaaaatgctttcacaaactaagagtgacataaaaaaaattgctattttaaat
aatgggaatataccaatatacatctgtacaaaagaagaaagaaaaaaatttttaatatcc
agagaattttggattaatgaaaatgaagatgttttaaaaattattaaacaaaaatatggt
gaagaaaacgtaaagcttttataa
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