Clostridium novyi: NT01CX_1402
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Entry
NT01CX_1402 CDS
T00431
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
cno
Clostridium novyi
Pathway
cno02020
Two-component system
cno02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cno00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
NT01CX_1402 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
NT01CX_1402 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cno03021
]
NT01CX_1402 (rpoN)
Transcription machinery [BR:
cno03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NT01CX_1402 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_11
HTH_17
HTH_10
HTH_23
HTH_20
HTH_24
MarR
Sigma70_r4
Fe_dep_repress
HTH_3
HTH_12
HTH_IclR
HTH_Crp_2
Sigma70_r4_2
HTH_21
MarR_2
HTH_Tnp_ISL3
HTH_5
HTH_26
Phage_terminase
EnY2
Motif
Other DBs
NCBI-ProteinID:
ABK60456
UniProt:
A0PYN2
LinkDB
All DBs
Position
552770..554137
Genome browser
AA seq
455 aa
AA seq
DB search
MKMNFNLELVQHQKLIMTQQMQLSIKLLQMSNLEIQKYMEKEIQENPVLDAEDNKEFAIK
EKDFIEYTKFLKHLEFDYYNNNNYSKDEDYVSPLNFIGEKKSLKEYLKEQILVQSHKKTI
KKACEYIVENIDDRGYVNINLDDIEKEINISKNSAYEALKIVQSLEPYGVGARDLKECLK
IQLNMKKIYDEDIVKIIDNYLPLIADNKYNVIAKKLNISVKLAQSYGDIIKSLEPKPSRG
FFTGEETNYIIPEAYIKRINDKYYVIMNNENIPTLNINKAYKQMFNENKNKEVKDFIKEK
LDKAVFLIKSINQRESTIYKILTKIVEMQPEYFEYGQESLKPMTLKELADELDIHESTVS
RAIKDKYIHTKHGTIKIKDLFTTKMFKMDSLEDVSTITVKGYIKKLIEKEDKKKPLSDQK
ICDFLQKKGVSISRRTVAKYREEAGIPSSSKRKRF
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgaagatgaattttaatctagaactagtacaacatcaaaagttaataatgacacagcaa
atgcaattatccataaaactccttcaaatgtctaatttagaaattcaaaaatatatggaa
aaagagatacaggaaaatccggttttagatgcggaggataataaggagtttgctataaag
gaaaaggatttcatagagtatactaaatttttaaaacatctagaatttgattattataat
aacaataactacagtaaagatgaggattatgtatccccacttaattttataggtgaaaag
aaatctctaaaggaatatttaaaagaacaaatattggtacaaagtcataaaaaaactata
aaaaaagcatgtgaatatatagtagaaaacattgatgatagaggatatgtaaatataaac
ttagatgatatagaaaaagagattaatatatctaaaaatagtgcttatgaagctttaaaa
attgtacagtccttagaaccatatggagttggagctagagatttaaaagaatgtttaaaa
attcaattgaatatgaaaaaaatatatgatgaagatatagtaaaaattatagacaattat
cttccgctaatagctgataataaatacaatgtaatagctaaaaaattaaatataagtgta
aaactagctcaaagttatggggatattataaaatctttagaacctaagccatcaagagga
ttttttacaggagaagagacaaactatataataccagaagcatatataaaaagaataaac
gataaatactacgtaataatgaacaatgaaaatataccaactttaaatataaataaagcc
tataaacaaatgtttaatgaaaataaaaacaaagaagtgaaagatttcattaaagaaaag
ttggataaagcagtatttttaataaaaagtattaatcaaagagaaagtacaatatacaaa
atactaacaaaaatagttgaaatgcaaccagaatactttgaatatggacaagagtcatta
aaaccaatgaccttaaaagaattagcagatgaattagatatacatgaatcaactgttagt
agagccattaaggataaatatattcatacaaaacatggaaccataaaaataaaagattta
tttaccacaaagatgtttaaaatggatagccttgaagatgtgtcaacaattacagttaaa
ggctatataaagaaattaatagaaaaagaggataaaaagaagcctttatcagatcaaaaa
atttgtgattttttgcagaagaaaggtgtaagtatttctagaagaacagttgctaagtat
agagaagaagcgggtataccatcttcaagtaaaagaaaaagattttag
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