Clostridium novyi: NT01CX_2302
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Entry
NT01CX_2302 CDS
T00431
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cno
Clostridium novyi
Pathway
cno03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cno00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NT01CX_2302
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cno03019
]
NT01CX_2302
03400 DNA repair and recombination proteins [BR:
cno03400
]
NT01CX_2302
Enzymes [BR:
cno01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NT01CX_2302
Messenger RNA biogenesis [BR:
cno03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NT01CX_2302
DNA repair and recombination proteins [BR:
cno03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NT01CX_2302
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HRDC
RQC
DEAD
Helicase_C
HTH_40
RecQ_Zn_bind
ResIII
DUF6115
DUF763
Trp_repressor
Helicase_Sgs1
Bombinin
HTH_38
Motif
Other DBs
NCBI-ProteinID:
ABK61815
UniProt:
A0Q173
LinkDB
All DBs
Position
complement(1497297..1499735)
Genome browser
AA seq
812 aa
AA seq
DB search
MKKTSVEILEKYYGYKSFRKGQEQVIKSVLDGNDVLAIMPTGGGKSICYQIPALMMDGLT
IVISPLISLMKDQVDSIKNMGVSCAYINSSLGIYEFNEVIENLKNNKYKILYVAPERLES
YEFLSAIKDVKISQVAIDEAHCVSQWGHDFRVSYRNVAKFIDGFKERPIVTAFTATASNE
VRDDIINLLRLKNPKVFITGFDRENLNITIIKSGSKKAYVLNYIENNKEDSGIIYAATRK
EVDNIYDNLSKKGFSIGRYHAGLSDDERKQNQEDFIHDRVRIMVATNAFGMGIDKPNIRY
VIHYSMPKNIEAYYQEIGRAGRDGEKSECILLFAPGDIHIQKYLIEVSVENPERKKKQYE
KLQEMVDLVYSNDCYRKYILNYFGEEFNESCSNCSNCLNEGEIVDKTIDAQKVLSCIYKM
KRSFGTTMVVDVLRGSKNKKVLNLGFNSLSTYGIMKEYTGEELKNFINTLVSHGYIGLSG
GTYPVLNLNNRSIGVLKGQEIVEFKVFEAKHKDTHINKLFNILKALRQEIAQREQVAPYI
IFGDGTLREMSLKYPRSREEMLEISGVGEIKYEKYGEEFEKAIIDYVKENNINLKNTYLN
LEENNKDIPLEVTTDIKLFNELLKIREDFAREEKVLPQMILSKNTLKEISGRYPLDDENL
KDISGIGPKKIERYGLKILQCVNKYVYDNNITVNWVDKKRRKAIIDGETRENNEIAMDML
SNGFSLNEIAKELEVGISTILGYVTDYIKNGGNIDFDLSLEGLYTKEDEKIIVDACNRVG
YEKVSKIKKELPPEIKYESIRAVILKKYYLAS
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaaaaacatcagtagaaattttagaaaaatactatggatataaaagttttagaaaa
gggcaagaacaagttataaaaagtgttttagatggaaatgatgttctagcaataatgcct
actggtggaggaaaatccatttgttatcaaatacctgctttaatgatggatggtcttact
attgtaatttctccattgatttctcttatgaaggatcaagttgatagtataaaaaatatg
ggagttagctgtgcgtatataaacagttcattaggtatatatgagtttaatgaagttata
gaaaatttaaagaataataaatataaaatattatatgtagcacctgaaagattagagtct
tatgaatttttaagtgctataaaggatgttaaaatatctcaagttgcaattgatgaggcg
cattgtgtcagccaatggggacatgattttagagtgagttatagaaatgtagctaaattc
atagatggatttaaggaaagaccaatagttacagcctttactgcaacagcttctaatgaa
gttagagatgacattataaatctattaagattaaaaaatccaaaagtatttataacaggg
tttgatagagaaaacttaaatattactataataaaatcaggaagtaaaaaagcttatgtt
ttaaattatattgaaaataataaagaagattcaggaataatttatgctgcaactagaaaa
gaagtagataatatatatgataatttaagtaaaaaaggattttcaattggaagatatcat
gcgggacttagtgatgatgaaagaaaacaaaatcaagaagattttatacatgatagagta
agaattatggttgcaactaatgcttttggtatgggaattgataagcctaatataagatac
gtaatacattatagtatgcctaaaaatatagaggcttattatcaagaaataggtagagca
ggaagagacggagaaaaaagtgaatgtatattattatttgcaccaggagacattcatatt
cagaagtatttaatagaagtaagtgttgagaatcctgaaagaaagaaaaaacaatatgaa
aagcttcaagaaatggtagatttagtttatagcaatgattgttatagaaaatatatacta
aattattttggagaagaatttaatgaaagttgtagcaactgtagtaattgtttaaatgaa
ggagaaatagttgataaaactatagatgctcaaaaggtattgtcttgcatttataaaatg
aagagaagctttggaactactatggtggttgatgtgcttagaggttctaaaaacaaaaag
gtattaaatttaggatttaatagtttatcaacttatggaataatgaaagaatatacagga
gaagaattaaaaaactttataaatacattagtatctcatgggtatataggtttaagtgga
ggtacatatccagttttaaacttaaataataggtccataggtgttttaaagggacaagaa
atagtggagtttaaagtctttgaggctaaacataaagatactcacataaataaattattt
aatatacttaaagcattaagacaggaaatagcacagagagaacaggtagcaccctatatt
atatttggagatggcacacttagagaaatgagcttaaaatatcctagaagtagagaagaa
atgcttgagatttcaggggtaggggaaattaagtatgaaaagtatggagaagaatttgaa
aaagcaattatagattatgtaaaagaaaataatataaatttaaaaaatacttatttaaat
ttagaagaaaataataaagatattcctcttgaagttacaacagatataaaattgtttaat
gaattattaaagataagagaagattttgcaagagaagaaaaagtgcttccacaaatgata
ttatctaaaaatacattaaaagagataagtggaagatatcctttggatgatgaaaaccta
aaagatatttcaggaataggacctaaaaagatagaaagatacggcttaaagatactacag
tgtgtaaataaatatgtatatgacaataatataacggttaattgggtagataaaaaaaga
agaaaagctataatagatggagaaacaagagaaaataatgaaatagctatggatatgcta
agtaatggatttagtttaaatgaaatagcaaaagaacttgaagttggaatttcaactata
cttggatatgtaactgattatataaaaaatggaggaaatatagattttgacttatcctta
gaaggactgtatacaaaagaagatgaaaaaattattgttgatgcttgtaatagagttgga
tatgaaaaagttagtaagataaaaaaagaacttcctccagaaattaaatatgaatctata
agagcagttatattaaaaaagtattatttagcttcttag
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