Chryseobacterium nepalense: M0D58_06520
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Entry
M0D58_06520 CDS
T08142
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cnp
Chryseobacterium nepalense
Pathway
cnp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cnp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M0D58_06520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cnp03019
]
M0D58_06520
03009 Ribosome biogenesis [BR:
cnp03009
]
M0D58_06520
Enzymes [BR:
cnp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
M0D58_06520
Messenger RNA biogenesis [BR:
cnp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
M0D58_06520
Ribosome biogenesis [BR:
cnp03009
]
Prokaryotic type
rRNA helicases
M0D58_06520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
UPQ77209
UniProt:
A0ABY4K8Y2
LinkDB
All DBs
Position
complement(1523823..1525511)
Genome browser
AA seq
562 aa
AA seq
DB search
MNLFTETNLSPDILKAIGELGYESPTEIQKQTIPFILSDIRDLIALAQTGTGKTAAFSLP
ILDMIDDTSRKIQLLVLCPTRELCLQITKDIKNYSKYMKDIKTTAVYGGSSIMDQIRSLK
DKPQIIVGTPGRVIDLINRKALDFSAIHWLVLDEADEMLSMGFKDELETILSETPETKQT
FLFSATMSKEVERISKSYLTKPHRISVGSINEVKKNIKHEYYVIGYRQKKEALKRLIDSN
PNQYSIIFCRTRMETQEVADFLMQNGYAADALHGDLSQAQRDTVMKKFRLKNIDILVATD
VAARGLDVNSLTHVIHYSLPDDPEVFVHRSGRTGRAGKDGISIALIKPEESRKLKQIKSV
TKIEMQEGKIPTGEDIIKAQVGGVFESLFEIHEDFFEFDDSLIPDLSAFTKEELAHKLLQ
FQLKDLAMYYKDRHDLIDQKLSSRDDDGGSRRDRRDRDRDRGRDRDRGERSERSGKPRRK
NEDMVRFFFNLGKKDQLKKLDVLDIINKATSGKSKKRAEIGDIEILEKFSFFEVEKSFKD
NVLSNIGSMKFKGKEMRAEVAN
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgaatttatttacggaaaccaatttaagtcctgatattcttaaggctattggcgaactg
ggttacgaaagcccgacagaaatccaaaaacagactatcccttttattctttcagatatt
cgcgacttgatcgcacttgcgcagacagggacaggcaaaacagcagcgttttcgcttccg
attttggatatgattgacgatacgagtcgcaaaatccaattattggtcctttgtccgaca
cgggaattatgtcttcagattacgaaagacattaaaaactactccaaatacatgaaagac
atcaaaacgacagccgtttatggtggaagcagtattatggatcagatcagatctcttaag
gacaaaccgcagattattgtgggaactccgggaagagtaattgaccttattaacagaaaa
gcactggatttttctgcgattcactggcttgtgctggatgaagcagatgagatgctttca
atgggtttcaaagatgagttggaaacaattttgagtgaaactcctgagacgaaacaaact
ttccttttctcggcaacaatgagcaaggaagtggaaagaatttctaaaagctacctcaca
aaaccgcacagaatttctgtaggttctatcaatgaggttaagaaaaacatcaagcatgaa
tattatgtgatcggttatcgccagaaaaaagaagctttaaagcgtcttatcgattccaat
ccgaatcagtattctattattttctgcagaacgagaatggaaacccaggaggttgcagat
ttccttatgcagaacggatacgccgcagatgcgcttcacggtgatctttcgcaggcacag
agagatacggtaatgaagaaattcaggcttaaaaatatcgatattcttgtggctacagac
gttgccgcaagaggattagacgtaaattccctgactcacgttatccattattctcttccg
gatgatcctgaagttttcgttcaccgaagcggaagaacgggtagagcaggaaaagacggt
atttctattgccctgatcaagcctgaagaaagcagaaagctgaagcagattaaatcggtg
actaaaattgaaatgcaagaaggtaaaattcctaccggagaagatattatcaaggctcag
gtgggaggtgtttttgaaagtctttttgaaattcacgaagatttctttgaatttgatgac
tccctgattcccgatttatcggcattcacaaaagaagaacttgctcacaaactccttcag
tttcagctgaaagatcttgcaatgtattataaagacagacatgatcttattgatcagaaa
ctgagcagcagagatgatgacggaggctccagaagggacagaagagaccgcgacagagac
agaggaagagatcgtgacagaggcgaaagaagcgagcgtagcggaaaaccaagaagaaaa
aatgaagatatggtaagattcttctttaatctgggtaaaaaagatcagctgaagaaattg
gatgtattggatattatcaacaaagcgacttccggaaaaagcaagaaaagagctgaaatc
ggggatatcgaaattcttgagaaattctcattcttcgaagttgaaaaatcattcaaagac
aatgttttgagcaacatcggatccatgaaattcaaaggaaaggaaatgagggctgaagta
gccaactaa
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