Chryseobacterium nepalense: M0D58_11190
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Entry
M0D58_11190 CDS
T08142
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cnp
Chryseobacterium nepalense
Pathway
cnp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cnp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M0D58_11190 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cnp03019
]
M0D58_11190 (rnr)
03016 Transfer RNA biogenesis [BR:
cnp03016
]
M0D58_11190 (rnr)
Enzymes [BR:
cnp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
M0D58_11190 (rnr)
Messenger RNA biogenesis [BR:
cnp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
M0D58_11190 (rnr)
Transfer RNA biogenesis [BR:
cnp03016
]
Prokaryotic type
tRNA degradation factors
M0D58_11190 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
S1
OB_RNR_1st
S1CSD-TOTE-2
Rrp44_S1
DUF4653
Motif
Other DBs
NCBI-ProteinID:
UPQ74616
UniProt:
A0ABY4K1E6
LinkDB
All DBs
Position
2543673..2545826
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AA seq
717 aa
AA seq
DB search
MPKKRKYISQKNDHKLQEIGRLILRFMNENSTKVYNYKQIAEGIDYKNPRQRELVIQALH
KLQATERIKEAEKGKYIVNLNIKGTLTGVIDFNQSGNAYVNVEGLEDDIFIHSKNVKDAL
QGDKVLIVTYTYKGKKLEGSVLEVLERGRTEFVGTLQVVAHKDFGFVVCDKKTINTDIFI
PKGKFGGANDGDKVVVKMTEWKPGDKNPEGEIIQVLGAPGEHETEIHSILAEYGLPYQFP
EEVERDADKIDRSINEAEVAKRWDMRGITTFTIDPKDAKDFDDALSIRKLENGNWEIGVH
IADVSHYVVPGTILDDEAYQRATSVYLVDRVVPMLPEVLSNDVCSLRPNEDKFTFSAVFE
LDDDANIKKQWFGRTVIHSDRRFTYEEAQERIETKQGDLQEEINVLDKLAKIMRAERIRK
GAITFDRSEVRFNLNENNEPVGVYFKISKDSNHLIEEFMLLANKKVSEFISLNKKGDITQ
NTFIYRVHDDPDPAKLESLRDFVSTFGYKMDLANSKKVAESLNRLLHDVKGKGEENMIET
LAMRSMSKAVYSTEPIGHYGLGFDFYTHFTSPIRRYPDLIAHRLLQHYLDGGKSPNKAEL
EEKAKHCSSMERLAADAERDSIKFMQVKFMEKHLGETFTGVISGVAEFGFWVEIPENGAE
GLIKLRDLVDDSYSYDAKTHAVYGMRHGKRYQLGDQVQIKVVKANLIQKQLDFKIVE
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaaaaaagaaaatatataagtcagaaaaatgatcataaactgcaggaaatcggg
agactgattctgcgttttatgaatgaaaattcaacgaaagtctataattacaagcagatt
gcagaaggaatagactataaaaatccgagacagcgcgagctagtcatccaggcgttgcat
aagctgcaggctacggaaagaattaaagaagccgaaaaaggaaaatatatcgttaatctt
aatatcaaaggaacattgacgggagttatcgactttaaccagtccggaaatgcctatgtt
aatgttgaaggtctggaagatgacatcttcattcattccaaaaatgtgaaagatgccctg
caaggcgacaaagttttaattgtaacctacacttataaaggtaaaaagctggaaggttcc
gttctggaagttcttgagagaggtagaacagaatttgtaggaacgcttcaggtagttgct
cataaagatttcggatttgtggtttgtgataaaaagaccatcaatactgatatttttatt
ccgaaaggaaaatttggaggtgctaatgatggtgataaggttgtcgtaaaaatgaccgag
tggaaacccggcgataaaaatccggaaggagaaattatccaggtactgggagctccgggt
gagcatgaaacagaaattcactctattcttgctgaatacgggctgccataccagtttcct
gaagaagtagaaagagatgccgacaaaatagacagaagtattaatgaagctgaagtggca
aaacgctgggatatgcgtgggattacaacttttaccatcgaccctaaagatgccaaagat
tttgatgatgcgctttccatcagaaaactggaaaacggaaactgggaaatcggggttcat
attgctgatgtatcacattatgtggttcccggaacaattctggatgatgaagcgtatcag
agagcaacctccgtttaccttgtagaccgcgttgtacccatgcttccggaagtgctgagt
aatgatgtctgttctcttcgtccgaatgaagacaaatttactttttcagcggttttcgaa
ttagatgatgatgctaatatcaaaaagcaatggttcggaagaacggtgatccattctgac
agaagattcacgtatgaggaagctcaggaaagaatcgaaacaaagcaaggtgatctgcag
gaagaaattaatgtgctggataagctggcaaaaatcatgcgtgcagaacgaatcaggaaa
ggagcaattaccttcgacagaagcgaagtgcggttcaatcttaatgaaaataacgaaccg
gttggtgtatattttaaaatcagtaaagattcaaatcacctgattgaagagtttatgctg
cttgccaataaaaaagtttcggaatttatttccctgaacaaaaaaggagatattacccaa
aatacttttatatacagggttcacgacgatccggatcctgcaaaactggaatcgttgaga
gattttgtatccactttcggatataaaatggatcttgccaacagtaagaaagtagccgaa
tctttgaatagattattgcatgatgtaaaaggtaaaggcgaagaaaatatgattgaaacg
cttgccatgagaagcatgagcaaagcggtctattctacggaacctattggtcactacgga
cttggtttcgatttttacacacactttacctcgcctatccgtcgttatccggatcttatt
gcccatcgtttacttcagcattatctggacggaggaaaatccccaaacaaagccgagctc
gaagaaaaagcaaaacactgcagttccatggaacgcttagcggcagatgcggaaagggat
tccattaaattcatgcaggtgaaatttatggaaaaacatcttggagaaacttttacaggc
gtaatttcaggagtagcggaatttggtttttgggtggaaattcctgaaaacggtgcggaa
ggcttaattaaactaagagatcttgtggatgattcctactcatatgatgccaaaacgcac
gccgtgtatggtatgagacacggaaagcgttatcagctgggagaccaggtacaaatcaaa
gtagtgaaggcaaaccttatccagaaacagcttgattttaagattgtagagtaa
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