Chryseobacterium nepalense: M0D58_12595
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Entry
M0D58_12595 CDS
T08142
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cnp
Chryseobacterium nepalense
Pathway
cnp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cnp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
M0D58_12595 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cnp03400
]
M0D58_12595 (mfd)
Enzymes [BR:
cnp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
M0D58_12595 (mfd)
DNA repair and recombination proteins [BR:
cnp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
M0D58_12595 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
UB2H
PPARgamma_N
Choline_kin_N
Motif
Other DBs
NCBI-ProteinID:
UPQ74884
LinkDB
All DBs
Position
2838973..2842341
Genome browser
AA seq
1122 aa
AA seq
DB search
MQLKTINEKFLPDLLQKEFGKEIFIHLENHQHISVKGSAGSAVSIVVAELFLTRKKTVLY
IVDDKEDALYVNTEMEDLLGKDKVLYFPATHLEPYQVEKTQNANLVLRTEAINKITSGKS
PKVIVAYAGALSEKVLKKEDFKAISHHIKVGDQLDFDFVDELLNHYNFQQTDFVSEPGEF
SVRGGIVDVFSFSNEKPYRITFFGNEIEGIKTFDIETQLSVDKVEDFQLVSNMNFTVTGS
RVSLLQLLPKESMVVSKNGIIGMQKLKTFYEKALEKYDTLSKDIAHRAPQELFISDQEFL
FDYKKFTTVDFGSVSIEGLIDLEEIKIDQIPQPSFHKNFELLIEDLEEKQSNGFDTWISF
TGEKQKERLESIFEELEHELPFKSFKSELHEGFVDHNHKLLVYTDHQIFDRYQRYKAKNT
FAKSEQLTLKDLMSLKIGDYIAHIDHGIGKFMGLVKVNNDGKIQECFKLTYKNGDLLYVS
IHSLHKISKYNGPEGREVVLSKLGSPTWKSLKQKTKAKVKQIAFDLIKLYAQRKTAKGFA
YTPDSYLQNELEASFIYEDTPDQEKATIDVKKDMEADMVMDRLVCGDVGFGKTEVAIRAA
FKAATDGKQVAVLVPTTILAFQHYRSFKERLKDFPVNVSYINRFRTAKQKSETLEALKNG
KVDIVIGTHQLAGSSVKFKDLGLLIIDEEHKFGVSVKDKLKTLKSNVDTLTLTATPIPRT
LQFSLMAARDLSVIKTPPPNRQPVETQLVGFNEEIIRDAVSYELQRDGQVYFINNRVENL
KEIAGLIQRLVPDAKVITGHGQMEGKQLEKNVLDFMEGKYDVLVSTTIVESGVDVPNANT
IFINDAQRFGMADLHQMRGRVGRSNRKAFCYLITPPYDMMTSDARKRLEAIEQFSDLGSG
FQIAMKDLEIRGAGDLLGAEQSGFINEMGFETYQKLMQEALEELKDDQEFENLFENEEER
NKLFKTTKDINIDTDLELMLPDSYISNTEERLLLYQKLADIDNEKNLEKFESELKDRFGN
LPEEAKNLLKSVSLKWLASEIGFEKIVMKNGVFLGYFPGNPQDKFYQTDKFRHIISYLTQ
NPAEAQLKEKTGKEGNQLMMRKDKVRNVDEVNSLLKSMLKAG
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
atgcaattaaaaaccattaacgaaaaattccttccggatctccttcagaaggaatttggg
aaagaaattttcattcacctggaaaaccatcaacatatatccgtaaaaggcagtgcagga
tcagccgtttctatagttgtggccgaactttttctcacccgtaaaaagactgttctttat
atcgttgatgataaagaagacgcactgtatgtcaatacggagatggaagaccttctggga
aaagataaagtgctgtattttccagcaactcatcttgagccttatcaggtggagaaaacc
caaaatgcaaatcttgttttaagaacagaagctattaataaaattacatcggggaaatct
ccgaaagtaattgtggcctacgctggtgcgctttcggaaaaggtgcttaaaaaggaggat
tttaaagccatttcccatcatataaaagtgggcgatcagcttgattttgattttgtggat
gaacttctgaaccattataatttccaacagaccgattttgtttctgaaccgggagagttt
tctgtaagaggagggattgtagatgttttctctttctctaatgaaaagccttaccgtatt
acttttttcgggaatgaaattgaaggcatcaaaacgttcgatatcgaaacacagctttct
gtagataaggttgaggatttccagttggtttccaatatgaattttacggtaaccggaagc
cgggtttctcttcttcagctcttgccaaaggaaagtatggtggtttccaaaaacgggatt
atcggaatgcagaagcttaaaacgttctatgagaaagcgttggaaaaatatgatacttta
agtaaggatattgcccacagagcgcctcaggaactttttatctccgatcaggaattttta
ttcgattacaaaaaatttaccacggtagatttcggaagcgtttctattgaaggtcttatt
gatctggaggagatcaaaatagatcagattccacagccgtcgtttcataaaaattttgaa
ctgctgatagaagatcttgaagaaaaacagagtaacggttttgatacctggatttcattt
acgggagaaaagcagaaagaaaggcttgaatctatatttgaagaactggagcatgagctt
ccttttaaaagttttaaatctgaacttcatgaaggatttgtagatcataaccataaattg
cttgtatatacagatcatcagatcttcgaccgatatcagcgctataaggcaaaaaataca
tttgcaaaatcggaacagcttaccttaaaagatttaatgtctctgaaaataggagattat
attgcccatatcgaccacggaatcggaaagtttatggggttggtaaaggtaaataatgac
ggtaaaattcaggaatgttttaaacttacctataaaaacggggatctcttgtatgtaagc
attcattcacttcataaaatttcaaaatacaatggtcctgaaggacgtgaagtggttttg
agtaagctcggatcaccaacctggaaatctttaaaacagaaaacaaaagcgaaagtaaaa
caaattgcttttgatcttataaaactctatgctcaaagaaagacagccaaaggttttgcc
tacactccggattcttatctgcagaacgagctggaagcgagctttatttatgaagatact
ccggatcaggagaaagcaaccattgatgtgaaaaaagatatggaggcagatatggtaatg
gacaggctggtttgcggggatgtaggtttcgggaaaacggaggtagcgatcagggctgca
tttaaagcggcaacagatggaaagcaggttgccgtattggttcctaccacaattctggct
tttcagcattacaggagttttaaagaaagacttaaagattttccggtaaatgtatcatat
atcaaccgtttcagaacggccaagcaaaaatctgaaactctggaagcacttaaaaacggt
aaggttgatattgttatcggaacgcatcagctggcgggcagttccgtgaagtttaaagat
ctgggattgctgattatcgatgaagaacataaattcggagtttccgtaaaagataaatta
aaaacgcttaaaagcaatgttgatacgctcacgcttacggctacacctattccgagaaca
ttacagttttcattaatggctgcaagagacctttcggtaatcaagactccaccgccgaac
agacaacctgtggaaacacaattggtaggctttaatgaagaaataatccgggatgctgtt
tcctatgagctccagcgtgacggccaggtatattttatcaacaacagagttgaaaacctg
aaagaaattgcgggattaatacagcgtctggtaccggatgcaaaggttattacgggacat
gggcagatggaagggaagcagctggagaaaaatgtccttgattttatggaaggaaaatat
gatgtgctggtttctacgacgattgttgaaagtggagtggatgttcctaatgccaatact
attttcattaatgatgcacaacgtttcggaatggcagatttgcatcagatgagagggagg
gtaggacgaagcaacagaaaagcattctgttatctcattacaccgccttatgatatgatg
acctctgatgccaggaaaaggctggaggccatcgaacagttttctgatttgggaagtggt
ttccagattgctatgaaagatcttgaaatccgtggtgcaggagatctattgggagctgaa
caaagtggatttattaatgaaatgggatttgagacctatcagaaattaatgcaggaagca
ctggaggagctgaaagatgaccaggaatttgaaaatttatttgaaaatgaggaggaaaga
aataagctctttaaaacaacaaaagatattaatattgatacggatcttgagctgatgctg
ccggattcgtatatctccaatacggaagaaagattattactctaccagaagcttgctgat
attgataacgaaaaaaacctcgagaaatttgaatctgaattgaaagaccgttttggaaat
ctgcccgaggaagcaaagaatttgcttaaaagtgtcagtttaaaatggctggcatcggaa
atcggatttgagaaaattgttatgaagaacggtgtatttctggggtatttcccgggtaac
ccacaggataaattttatcagacagacaaattcagacatatcatcagttatcttacccaa
aacccggcagaagcacagcttaaagaaaaaaccggtaaagaaggcaaccaactgatgatg
cggaaggataaagtaaggaatgttgatgaggtaaattctcttttaaaatcaatgcttaag
gcaggttaa
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