Chryseobacterium nepalense: M0D58_14830
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Entry
M0D58_14830 CDS
T08142
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cnp
Chryseobacterium nepalense
Pathway
cnp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cnp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M0D58_14830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cnp03019
]
M0D58_14830
03400 DNA repair and recombination proteins [BR:
cnp03400
]
M0D58_14830
Enzymes [BR:
cnp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
M0D58_14830
Messenger RNA biogenesis [BR:
cnp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
M0D58_14830
DNA repair and recombination proteins [BR:
cnp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
M0D58_14830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
Fe_dep_repress
Cas3-like_C_2
DUF7022
HTH_24
LexA_DNA_bind
Cullin_Nedd8
GntR
Motif
Other DBs
NCBI-ProteinID:
UPQ75312
LinkDB
All DBs
Position
complement(3292404..3294305)
Genome browser
AA seq
633 aa
AA seq
DB search
MISQQDFQELKFKTLKYFWGYDNFRDSQEAIIDSVINEKDTLVLLPTGAGKSLCYQLPSL
LKEGTCLVISPLLALMKDQVSQLKSRGIEAEYLSSELDEYDAEGIYNRCKEGLTKLLYIS
PERLTNKQFLQNIEEIQLSFIAVDEAHCISEWGQDFRPSYQNIKEFRRNNPKISCLALTA
TATPKVLDEIRAKLELKNPQIFQRSFKRENIRILTEEVSDKFQKIYDILKFTKQSGIIYV
RTRKEAELLSEFLQKNQLKNVDFFHAGLTTKEKNAKQTIWNNSDNQVLISTNAFGMGIDK
DNVRFVIHYSPAPSIENYYQEIGRAGRDGEESFAFLLWNRQELSNFDDILKNQIPNKAEF
LKILTYLYSIFQVAEFEMPEKVFELNLNGIQNFTKLSSAKIKNVLNFLHNQEIIYFNDHK
SLSSLQLLMQADEIEQLPHKDAYFIELMLRTISGITTHKVMFSEQQVSNKIGVSIHLIKE
RLKELQQKGYVEYVDGALSSIKFLKPRDERLNNSQYWKLFEHIQKNKIQKWEEMKFYIED
NRYCKMKLILTYFGEKKSKNCGTCSVCEKNRQSIFGKNISGEIIQVLAKKACTIEEISIQ
LNYHPKENILETLIYLLDSGKVKMLNFRTYALA
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgatttcccaacaagattttcaagaattaaaattcaaaaccttaaaatatttttggggt
tatgataacttccgggattcccaggaagccattattgattctgttattaatgaaaaagac
acacttgtccttttaccaacaggtgcaggaaaatcactctgctatcagcttccttcatta
ttaaaagaaggaacctgcctggtaatttcaccacttctggcattaatgaaagaccaggta
agccaactgaaatcaagagggattgaagctgaatatttgtcttctgaactggatgaatat
gatgcagaaggcatctataaccgttgcaaggaagggttgaccaaattgctttatatctct
cctgaaagacttaccaataaacagtttcttcaaaatattgaagaaattcaattgtctttt
attgcagtggatgaggcacactgtatttcagagtgggggcaggatttcaggccaagctat
cagaacatcaaggaatttagaagaaataatcctaaaatatcctgtctggccttaacggca
acggcaacaccgaaagttttggatgaaataagagcaaagcttgaacttaaaaatccccag
attttccaaaggagttttaagagggaaaatatcagaattcttacagaagaagtttccgat
aaattccagaaaatctatgatatcctgaagtttaccaaacagtctggaattatttatgta
agaacaagaaaagaagcagagctgctgagcgagtttttacagaaaaaccagttaaaaaac
gttgatttttttcatgcaggccttacaacaaaggagaaaaatgctaaacaaaccatctgg
aacaacagcgataatcaggttctcatctccacgaatgcttttggaatgggaattgacaag
gacaatgttcgtttcgtgattcactactcccctgctccttccattgaaaattattatcag
gaaatcggaagagccggaagagatggtgaagaaagctttgccttcttactttggaacagg
caggaactttctaattttgacgatatattaaaaaaccagattcccaacaaagctgaattc
ttaaaaatcctcacatacctctattccatttttcaggtagcagaatttgaaatgcctgaa
aaagtttttgagcttaatttaaacggaattcaaaattttacaaaactttcttcagccaaa
attaaaaatgttctgaatttccttcataatcaggaaattatttatttcaatgatcataaa
agtctttcatctcttcagcttttaatgcaggccgatgaaattgaacagcttccgcataaa
gatgcttattttattgaactcatgcttcgtaccatttcaggaattacaacacacaaagtc
atgttcagtgagcagcaggtgagcaataaaatcggggtgagtattcatttaattaaagaa
agacttaaagaacttcaacagaaaggatatgttgaatacgtagacggagcactttccagc
attaaatttttaaaacccagagacgaacgattgaataattctcagtactggaagcttttt
gaacacattcagaaaaataaaatccagaaatgggaagagatgaagttttacattgaagat
aaccgctattgcaaaatgaaactgatccttacctattttggtgaaaagaaatctaaaaac
tgcggaacgtgttctgtttgtgagaaaaacagacagtctattttcgggaaaaatatttct
ggtgaaatcattcaggttcttgctaaaaaggcctgtacaatagaggaaatttccatccag
ctgaattatcatcctaaagaaaatattcttgagactcttatttatcttttggattccggc
aaggtaaaaatgctaaatttcagaacatatgctttagcctaa
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