Chryseobacterium nepalense: M0D58_17010
Help
Entry
M0D58_17010 CDS
T08142
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
cnp
Chryseobacterium nepalense
Pathway
cnp03030
DNA replication
cnp03430
Mismatch repair
cnp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cnp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
M0D58_17010 (dnaE)
03430 Mismatch repair
M0D58_17010 (dnaE)
03440 Homologous recombination
M0D58_17010 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cnp03032
]
M0D58_17010 (dnaE)
03400 DNA repair and recombination proteins [BR:
cnp03400
]
M0D58_17010 (dnaE)
Enzymes [BR:
cnp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
M0D58_17010 (dnaE)
DNA replication proteins [BR:
cnp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
M0D58_17010 (dnaE)
DNA repair and recombination proteins [BR:
cnp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
M0D58_17010 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
RNase_T
tRNA_anti-codon
DUF2857
Motif
Other DBs
NCBI-ProteinID:
UPQ75735
LinkDB
All DBs
Position
3751589..3756265
Genome browser
AA seq
1558 aa
AA seq
DB search
MYLVFDTETTGLPKNFNAPLSDSDNWPRMVQIAWQLHHDDGTLIENQDYIIKPEGYDIPF
NAARIHGITTKIANEEGRDLTEILNEFSKVLEKVRVVSGHNVEFDYNIVGAEFYRKNIKD
NLQEKPRADTMVLGTDFCQLGGGRGGRFKPPKLEELYEKLYGHKFDEAHNAAADVNATAQ
VFFEMMRIGVIPAEVLKISEDQLTYFKTLYPDPIKPFNIVIRRQVADFHNKKKQQDFGSI
DEIDLGKYFNFDNHSVFSTLSATSSINDLIKKATDDNFPAVGMVDLGNMMGAFKFVSAVE
GANSDRAKKHKEYLAKKQEAEEKGEAFNEAEPVSEPLIPVVGCEFYISERYEQKQFTKDD
PDRRTQVVLLAKDFNGYKNLAKLSSIGFLKGFYFGVPRVSRELIAQYKEGVIALTSGIHG
DIPDAILNTGEQKGEELFKWWKDTFKDDFYVQIQNHKLPEEEHLNDVLLHFADKYNVKIL
AQNETFYTNRDDSNIQDIVSCIKDGEKLSTPVGKGFGKRRGLATGEYYIKNSDEIKEAFL
AYPDAFDAYEEFTAKFKPYTLKRDVLLPKFDIPQEFIHAEDELDGGKRGEMAYLTYLTYE
GAKKRYGVNGITEGIKERLDFELEVIANTGYPGYFLIVQDFCNEARKMGVWVGPGRGSAA
GSAVAYCIGITNVDPIKYDLLFERFLNPERVSMPDIDIDFDDEGRDRIIKWVIDKYGQSQ
VAQIITYSVLGGKSAIKDAGRVLDVPIPDTNNIAKLIPSTPGMNIAKALAKYDKLKPEEQ
MLVDEMRLVLDSPSDPRHDVLASAKKMEGCIRNTGIHACGVIITPEDVSNLVPVTIAAKD
ADILVSQFDNSVAESAGLLKMDFLGLRTLTIIKDALKLVKERHGVDIDPDEIPLDDAKTY
QLFKEGRTIGIFQYESPGMQKYMRELKPTVFADLIAMNALYRPGPIKYIPNFINRKHGIE
EIVYDLPETEEYLKETYGITVYQEQVMLLSQKLANFTKGEADTLRKAMGKKQIDVLNKMY
PKFIEGGRKNNLDEERLEKIWNDWKAFAEYAFNKSHSTCYAFIAYQTAFLKANYPAEYMA
SVMSNNINNTDSITMFMEDCKSMGVDVLGPDVNESQYKFSVNEKGQIRFGLGAIKGIGEG
PSEAITRERANGRFKNIYDFFERILPSQMNKRVAESLVLAGAFDELDSFHRGQYFDIDMA
GRTNLERLIRYGQSFQESKNEMENSLFADFAEEVQIEQPKLPPCPEWPNMHKLNKEKEII
GFYLSAHPLDEFRYQYQFMQGQLSKKAVLEKEEEVKLVVDEAPILEQDAPEDVTELVEIV
SDDIVAGEEEEIIEEVTKKAEPKGVFHFLNLDEVDAYKEQAFAGKQEELFEEKKKDWKTI
QKERENGGGGKEYTVAGLITEYRVQDGFRSGEKVAFVTLEDYSGSYSFRLGDRDYMRLKE
KLEVQRFVIFKIKFAQVKDGRVFVNVNEVIELQEAFERFAKSISLVMDVMDFRPEDLTFF
RSVLERNQGDQKLKFYIKNTEDDREEHIEVQSMKHSVHLSGELIKEIQLLSKYEFYLN
NT seq
4677 nt
NT seq
+upstream
nt +downstream
nt
atgtatttagtttttgacacagaaaccacaggtttaccaaagaatttcaatgctccgctt
tcagactcagacaactggccaagaatggttcagattgcatggcagctgcatcatgatgat
gggacacttattgaaaatcaggattatatcataaaaccggaaggatacgatattcccttc
aacgccgcgagaattcacggtattactacgaagattgccaatgaagaaggtcgtgatctt
actgaaattttaaatgaattctctaaagttttagaaaaagtaagagtcgtttccggacac
aatgtagagtttgattataacattgtaggagcagaattttaccgtaaaaatattaaagac
aaccttcaggaaaagcctagagccgataccatggttctgggtacagatttctgtcagctc
ggcggcggccgcggtggcagatttaagcctccaaaactggaagagttgtacgaaaagctg
tacgggcacaagtttgatgaagctcataatgctgctgcagacgtaaatgcaaccgctcag
gttttcttcgaaatgatgagaatcggggttattcctgcggaagttttaaagatttctgaa
gatcagcttacatattttaaaacgctttatcccgacccgatcaaacctttcaatattgtt
atcagaaggcaggttgcggatttccataataaaaagaaacagcaggattttggaagtatt
gatgaaattgatctgggaaaatatttcaattttgataatcacagtgttttttcaacatta
tcggcgacttccagcattaatgatctgattaaaaaagccaccgatgataacttcccggct
gtcggaatggtagatctgggaaatatgatgggtgctttcaaatttgtttccgcggtggaa
ggagcaaattcagatcgtgctaaaaagcataaggaatatttagcaaaaaaacaggaagcg
gaagagaaaggcgaagcttttaatgaagctgaacctgtgtcagagccgttaattcctgtt
gtaggctgtgagttttatatctctgaacggtatgaacagaagcagtttaccaaagatgat
cccgaccgaagaacacaggttgtccttttggcaaaagattttaacggatataaaaacctg
gcaaaactttccagtatcggtttcctgaaaggattttattttggagttccaagagtaagc
cgcgagctgatcgcacaatataaagaaggagttatcgctttaacttcaggtattcatgga
gatattcctgatgccatattaaataccggggagcaaaaaggagaagaactgttcaaatgg
tggaaagatacctttaaagatgatttttatgttcagattcagaatcataagctacccgaa
gaagagcacttaaatgatgttctccttcattttgccgataaatataatgttaaaatttta
gcacagaacgaaacgttttacacgaatagagacgattccaatattcaggatattgtcagc
tgtatcaaagatggtgaaaagttgtcaacgcccgttggtaaaggttttggtaaaagaaga
ggtcttgctaccggagaatattacattaaaaattcagatgagatcaaggaagcatttctt
gcttatcctgatgcttttgatgcgtatgaagaatttactgcgaagttcaaaccttatacc
cttaaaagagatgttttgcttccgaaatttgatatccctcaggaattcatacatgctgaa
gatgaacttgacggaggaaaacgtggagaaatggcttatcttacctatttaacgtatgaa
ggcgcaaaaaagagatatggagttaatggaataactgaaggtatcaaagaacgtctcgat
ttcgaacttgaagtaatcgccaatacgggttatccgggttatttcctcatcgtacaggat
ttttgtaatgaagcccggaaaatgggagtttgggtagggccgggcaggggttctgctgca
ggatctgctgtagcatactgcatcggaattaccaatgtggatcctattaaatatgatctc
ctttttgagagattccttaatcctgaaagggtttccatgccggatattgatattgacttt
gatgatgaaggccgtgaccggattattaaatgggtaatcgataagtacggacagagccag
gtagcgcagattattacttactctgttctgggtggtaaatctgctattaaagatgcagga
agagtactggatgttccgattcctgatacgaataatattgccaaactgattccttccacg
ccagggatgaatattgcgaaagccttggcaaaatatgataaactaaaaccggaagaacag
atgctcgttgatgagatgagactggttttagacagtccttctgatcctcgtcatgacgtg
cttgcaagtgcaaaaaagatggagggatgtatccggaatacagggatccatgcctgtggg
gtgattattacacctgaagatgtgagtaacttggttccggtaacgattgcggcaaaagat
gcggatattttggtgtcacaatttgataactctgttgctgaaagtgccggtctcctaaag
atggacttcctgggccttagaacacttaccattattaaagatgccttgaagctcgtaaaa
gaacgacatggcgtggatattgatccagacgaaattcctttggatgatgctaaaacctat
caactttttaaagaaggacgaaccatcgggattttccagtatgaaagtcccgggatgcag
aaatacatgagggagcttaaaccaacggtttttgctgaccttattgccatgaatgctttg
taccgtccgggtccgataaaatatattccgaactttatcaacaggaaacatggcattgaa
gaaattgtttacgatttacccgaaactgaagaatatttaaaggaaacttacggaattacc
gtttatcaggagcaggtaatgcttttatcacaaaaattggccaactttacaaaaggtgag
gcggacacgctgagaaaggcaatgggtaaaaagcagattgacgttcttaataaaatgtat
ccgaaattcatcgaaggcggaagaaaaaacaatcttgatgaagaaagattagaaaaaatc
tggaacgactggaaagcttttgctgaatatgcctttaataaatcacactctacctgttat
gcgtttattgcttatcagacagcgttcttgaaagccaattatccggcagaatatatggca
agtgtaatgagcaacaacattaataataccgactcgattaccatgttcatggaagattgt
aaaagtatgggtgttgatgtattgggtccggatgttaatgaatctcagtataaattttcg
gtaaacgaaaaaggacagatccgtttcggattaggagcgattaaaggtattggtgaaggg
ccgagtgaagctattacaagggaaagagcaaacggaagattcaaaaatatttatgatttc
tttgaaagaattcttccttcgcagatgaataaaagagtggcggaaagtttggtgttggcg
ggagcttttgatgagctggattctttccaccggggccagtatttcgatatagatatggcc
gggagaaccaatctggaaagactgatcagatacggacaaagctttcaggagagtaaaaat
gagatggaaaattctctttttgcagattttgcggaagaagttcagatcgaacagcccaaa
ctgccgccctgcccggaatggccgaatatgcataagctgaacaaagaaaaggaaattata
ggattctatctttccgcacatcctctggatgagttcaggtatcaataccagtttatgcag
ggacagctttctaaaaaggctgttttggaaaaagaggaagaagtaaaactggtagtggat
gaagctcctatccttgagcaggatgctcctgaagatgttactgagcttgtagaaattgtt
tccgatgatattgttgcaggtgaggaggaagagattattgaagaagtcacgaaaaaggca
gagccaaaaggagtttttcattttcttaatctggatgaggtagatgcttataaagaacaa
gcctttgccggcaagcaggaagaattgtttgaagagaagaagaaagactggaaaacgatc
cagaaagaaagagaaaatggcggaggtggtaaagaatatacggtcgcgggactgattact
gaatatcgtgtgcaggatggtttcagaagcggtgaaaaggttgcttttgttacccttgaa
gattattctgggtcctattctttccggctcggagacagggattatatgcgtttgaaagaa
aagctggaagttcagcgttttgtgatctttaagattaaatttgcacaggtaaaagacgga
agggttttcgtgaatgtaaacgaggtgattgaacttcaggaagcatttgaacggtttgcc
aaaagcatttctctggtcatggatgtgatggatttcaggcctgaagatcttacttttttc
agaagtgttctggaacgtaatcagggagatcagaaactgaaattctatatcaaaaatacc
gaagatgatcgggaagagcatattgaagttcagtcgatgaagcattcggtacatctcagt
ggagaactgattaaggaaattcaactgcttagcaaatatgaattttatctgaattaa
DBGET
integrated database retrieval system
