Catalinimonas niigatensis: PZB72_07305
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Entry
PZB72_07305 CDS
T10977
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
cnq Catalinimonas niigatensis
Brite
KEGG Orthology (KO) [BR:
cnq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cnq03009
]
PZB72_07305 (rlmD)
Enzymes [BR:
cnq01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
PZB72_07305 (rlmD)
Ribosome biogenesis [BR:
cnq03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
PZB72_07305 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_15
TRAM
Methyltransf_25
TRM5-TYW2_MTfase
MTS
Cons_hypoth95
N6_N4_Mtase
PrmA
FtsJ
RrnaAD
DUF3857
PCMT
Methyltransf_11
Motif
Other DBs
NCBI-ProteinID:
WPP53649
LinkDB
All DBs
Position
1863731..1865152
Genome browser
AA seq
473 aa
AA seq
DB search
MGNRKNIVLKEIRIDRMAAEGKCIAHHEDMVIFVKDVAPGDVVDLKVTKKKKSFMEAKPI
HFHQLSSIRTEPFCSHFGICGGCKWQHIPYELQLQYKQQQVVDNFERIGKAPIGEMLPII
PSEETTYYRNKLEYTFSTHRWLTREEIGSGADFDRRALGFHIPQSFEKIIPIVHCYLQPD
PSNAIRLALDEFARTHDIPFYDPVNHVGMLRNLIIRTSNTQEVMVIVQFGGEAANHPEKV
RQVMQFLQESFPEITSLQYIINPKKNDTYFDLPVELYHGIPHITEKMEDLMFRISPKAFY
QTNAQQAYQLYKLARSFANLQGDEVVYDLYTGTGTIANFIARQARQVVGIEYVEDAIEDA
KVNAKINDITNSLFYAGDIKEVLNEQFLATHERPDVVITDPPRNGMHPDVVQKLLELQAS
RIVYVSCNPATQARDVAMLGQKYDVIKLQPVDMFPHTHHVENVALLSLRDVIP
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgggaaacaggaaaaatattgtgctgaaggagatcagaatagatcggatggctgctgaa
ggtaaatgtatcgcgcatcatgaggatatggtaatttttgtaaaagatgtagcgccggga
gatgtggttgacctgaaggtgaccaagaagaaaaaatcgtttatggaggcaaagcccatc
cattttcatcaactttcttccatccgtactgaacctttctgtagtcattttggaatctgt
ggaggatgtaaatggcagcatattccttacgaactgcaactgcaatacaaacagcagcag
gtagttgataactttgagcgtattggaaaagcaccgataggagaaatgttacccattatt
ccttctgaggagacaacttactaccggaataaacttgaatacaccttttctacccatcgc
tggcttacccgagaagagattggtagcggagcagattttgatagaagagcactgggtttt
catatacctcaaagttttgaaaagattatacccattgtccattgctatcttcaacctgat
ccgtctaatgcaatcaggcttgccttggacgaatttgccaggacacatgacatccctttt
tatgatccggtaaatcatgtgggtatgctacgcaatctgatcatcaggaccagcaatacc
caggaggtcatggtcattgttcagtttggaggtgaggcggcaaatcatccggaaaaagtc
aggcaggtgatgcagttcctacaggaaagttttcctgaaatcacttcattgcagtatatc
ataaaccctaagaaaaatgatacctactttgatttaccagtagaattgtatcatggcatt
cctcacatcactgaaaagatggaggatttgatgttcagaattagtcccaaagccttttat
cagacgaatgcgcagcaggcttatcaactttacaagcttgcacgatcatttgcaaatctg
caaggtgatgaagttgtatatgatctttataccggtaccggcaccattgcaaattttata
gcccggcaggccagacaggtagtaggtattgaatatgtggaagacgccattgaagatgcc
aaggtcaacgctaaaatcaatgatattaccaattctctattttatgctggtgatattaaa
gaagttttgaatgaacagtttctagcaacacatgagcgcccggatgtagtgattactgat
cctccccgtaacgggatgcatccagacgtggtacaaaaacttctggaactgcaagcttct
cgtattgtatacgtgagttgtaatccagctacccaggcaagagatgtagctatgctagga
cagaagtatgatgttatcaaattacagcctgtagatatgtttcctcatacacatcatgta
gaaaatgttgcactgctttctctaagagatgtaatcccatga
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