Catalinimonas niigatensis: PZB72_09010
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Entry
PZB72_09010 CDS
T10977
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cnq Catalinimonas niigatensis
Pathway
cnq03020
RNA polymerase
Brite
Enzymes [BR:
cnq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PZB72_09010 (rpoC)
Transcription machinery [BR:
cnq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PZB72_09010 (rpoC)
DNA repair and recombination proteins [BR:
cnq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PZB72_09010 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
WPP52523
LinkDB
All DBs
Position
complement(2227452..2231786)
Genome browser
AA seq
1444 aa
AA seq
DB search
MAFKKNRKISNDFSTVTISLASPESILESSHGEVTQPETINYRTYKPEMGGLFCERIFGP
VKDWECHCGKYKRIRYKGIICDRCGVEVTEKKVRRERMGHIELVVPVAHIWYFRSLPNKI
GYLLGLPTKKLDQIIYYERYAVVQPGIKAEDGISYLDFLTEDEYLDIIDKLPADNQKLDD
NDPNKFIAKMGAEALEMLLARLELDELSYSLRHQAQTDTSQQRKAEALKRLKVVESFRDA
KTRIENRPEWMVIKMVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIDIK
APEVILRNEKRMLQEAVDSLFDNSRKVNAVRSDGNRALKSLSDMLKGKQGRFRQNLLGKR
VDYSGRSVIVVGPELKMHECGLPKDMAAELFKPFIIRKLIERGIVKTVKSAKKIVDRKDP
VVWDILENVLKGHPVMLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNADFDGDQM
AVHVPLGHEAILEASMLMLSSHNIMNPANGAPITVPSQDMVLGLYYVTKGRRSTEDLAVE
GEGMTFYSPEEVILAINEKCVSKHAYIKVRVKVRDEETNELSVQLVETVAGRVIFNQLIP
EEVGYVNELLTKKKLQQIIATVFKIAGVSRAAKFLDDIKELGFQSAYKGGLSFGLDDIVV
PGQKDKLVEQAKNEVDAVKNNYFMGLITDNERYNQVIDIWTRVNSQITAALMKQMEEDRQ
GFNSIYMMMHSGARGSREQIRQLGGMRGLMAKPQKNLQGSVGEIIENPILSNFKEGLDVI
EYFISTHGARKGLADTALKTADAGYLTRRLVDVAQDVVIRDFDCGTVRGLRVSALKDNEE
IVEPLSERILGRVAVNDEYDPISNELLIKSGEEITEKIAQRIDNSGIDEMEIRSPLTCET
RHGICSNCYGRNLASGKMVQIGEAVGVIAAQSIGEPGTQLTLRTFHVGGTASNIAVDAMI
KSKFDGVVEYEEIKYLKTTDDEGEAKTVVMGRSGEIKILDEKSGKVLSTNNVPYGSFLKV
KEGEKVKKGQELCNWDPYNAVILSEYEGTVDFEAIEQGITFKEEFDEHTGHREKVITETK
DKAKNPAILINPTKASDLDEPKAYNIPVGAHLAVDKGDKVKAGQVLVKIPRMMSKSRDIT
GGLPRVTELFEARNPSNPAVVSAINGAVTYGGVKRGNREIFIESKDGVKKRYLVPLSKHI
LVQDNDFVKAGMALSDGAITPADILSIKGPTAVQEYLVDEIQEVYRLQGVKINDKHIEVI
VSQMMQKVEIVDAGDTTFLMRQVVDKFAFREENDLILDKKVILDSGDSIKLKPGMIVSQR
QLRDENSSLKRQDKKIVQVRDAEPALAKPTLQGITQSSLGTESFLSAASFQETTKVLSEA
SIRGKRDELKGLKENIIVGHAIPAGTGIRTYERIIVHSKEEYDQLKSSRESKKEETRSTM
EANS
NT seq
4335 nt
NT seq
+upstream
nt +downstream
nt
atggcattcaagaaaaatagaaaaatctctaatgatttctccactgtaacaatcagtttg
gcttcacctgaatccatactggagagctctcacggtgaagtaacacaaccggaaaccatt
aactacaggacatataagcctgaaatgggaggtttgttttgtgagcgcatttttggtcct
gtaaaagactgggaatgtcactgtgggaaatacaagagaatacgatataaaggtattata
tgtgacagatgtggtgttgaagttactgaaaagaaagtgcgccgtgaaagaatggggcat
attgagctggtagtacctgttgctcatatttggtatttcagatcgcttcccaacaaaatc
ggatatcttcttgggcttccgaccaaaaagctggatcagattatctattacgaaagatat
gcggtcgtacagcccggtattaaggcagaagatggaatcagttacttagatttcttaaca
gaagatgagtatctcgacattattgacaaactgccagctgataaccaaaagctggatgat
aacgatccaaataaatttattgccaagatgggagcagaggccttggaaatgctcctggct
cgtcttgaactggacgaattatcctatagcctgagacatcaggcacagaccgatacttct
cagcaacgtaaagctgaagcacttaagcgcctgaaagtagtagaatctttccgcgatgcc
aaaacccgtatcgaaaaccgccctgagtggatggtgatcaaaatggtgccggtgattccg
cctgagttacgtccattggtacctttggatggtggtagatttgctacttctgacttgaat
gacctgtatcgtagggtaattatcagaaataaccgtctgaagcgtctaattgatattaaa
gcgcctgaagtaattcttagaaatgagaagcgcatgctgcaggaagcggtagactcattg
tttgataactcacgtaaagtgaatgctgtacgttctgatggaaaccgagcattaaagtct
ttgagtgatatgcttaaaggtaagcagggacgtttccgtcaaaacctgttaggtaagcgt
gtggattattccggtcgttcggtcatcgtcgtaggacctgaattgaaaatgcatgagtgt
ggtctgcccaaagatatggctgccgagcttttcaagccttttattattcgcaagctgatt
gagcgcggtattgttaaaaccgtaaaatctgccaagaaaattgtggatcgcaaagatcct
gtggtttgggatattctggaaaacgtattgaaaggacatccagtcatgctgaaccgtgct
cctacacttcaccgtctgggtattcaggcatttcagcctaagttgattgagggaaaagcg
atacaactgcacccattggtatgtacagcctttaacgctgactttgatggtgaccagatg
gcggtacatgttcctcttggacatgaggctatcctggaagcttctatgctgatgctttct
tctcataatattatgaaccctgcgaatggtgcccctattactgtaccttctcaggacatg
gtattaggtctttattatgtgactaagggaagaagaagtactgaagatttggcggtagag
ggagaaggaatgaccttttattcccctgaggaagtaatcctggccatcaatgaaaagtgt
gtttccaaacatgcctatatcaaggtaagggttaaagtgagagatgaggaaaccaacgaa
ctgagtgtacagcttgtagaaacggttgccggaagggtgatatttaaccagctgattcct
gaggaagtaggctatgtaaacgagcttttgacaaaaaagaaattgcaacaaattattgca
acagtcttcaaaattgctggagtatcaagagccgcgaagttcttagatgatattaaagaa
ctaggattccaatcggcttataaaggtggactatcttttggtctggatgatatcgtagtt
cctggacaaaaagataagctggtagagcaagcgaagaacgaggtggatgctgtgaagaat
aactacttcatgggtctgatcacagataacgagcgttataatcaggtgattgatatctgg
acaagagtaaactctcagattacggctgcgcttatgaagcagatggaggaagaccgtcaa
ggctttaactctatttatatgatgatgcactctggagcgagaggttcacgagagcagatc
agacagttgggtggaatgagaggtctgatggctaagcctcagaaaaaccttcaaggttca
gtaggagagattatagaaaaccctatcctctccaacttcaaagaaggactcgacgtaatt
gagtactttatctctacccacggtgctcgtaaaggtttggccgatacagcactgaaaact
gcagatgcaggttacctgacccgtcgtttggtagatgtggcacaagacgtggtaatccgt
gattttgactgtggtactgtgagaggactgagagtgtcagcgttgaaagacaatgaagaa
attgttgaaccactttcagaaagaatacttggccgggttgcagtaaatgatgaatatgat
ccgataagcaatgagttgctgataaaatcaggtgaggaaattaccgagaagattgcgcag
cgtattgataacagtggtatagatgaaatggagattcgctctccattgacttgcgaaact
cgtcatggtatttgttcaaattgttacggaagaaatttagcttccggtaaaatggtgcaa
atcggagaggctgtaggcgtaattgcagcacagtctatcggtgagccaggcacacagctt
actttgagaacattccacgtgggtggtacagcttcaaacattgccgttgatgcgatgatc
aagtctaagtttgatggtgtcgtagagtacgaagaaataaaatacctcaaaactactgat
gacgaaggagaagccaaaactgtggtcatgggaaggtcgggagaaattaaaattcttgat
gaaaaatcaggcaaagtactctctaccaataatgtgccttatggttcattcctgaaagta
aaagagggtgaaaaggtgaagaaaggacaggaactttgcaactgggatccgtacaatgca
gttatactctctgaatatgagggtacagtagattttgaagctattgaacagggaatcact
ttcaaagaagagtttgatgagcatacaggtcacagagagaaggtaattactgagactaag
gataaggctaaaaaccccgctatacttattaaccctacaaaagcttctgatttggatgag
cctaaagcttataacattccagtaggcgctcacttggcagtagataagggtgataaagta
aaagcaggccaggttttggtaaaaattccgcgtatgatgagtaagtcacgtgatattacg
ggaggtttaccaagagtgaccgagttatttgaagcacgaaacccttctaatcctgcggtg
gttagcgcgatcaatggagcagtaacctatggtggagtgaaaagaggtaaccgggagata
tttattgaatcaaaagatggtgtaaagaaaaggtatttagtgcctctttctaaacatatt
cttgttcaggacaacgattttgtcaaggcgggtatggcattatcagatggtgcaattact
cctgctgatattttgtctatcaaaggacctactgcagttcaggaatatcttgtggatgag
attcaggaagtgtaccgtttacaaggcgtgaagatcaatgataagcacatagaggtgatt
gtaagccagatgatgcaaaaggtagagatcgtggatgccggtgacacaaccttcttgatg
cgtcaggtagttgataaatttgcctttagggaagaaaatgacctgatactggacaagaaa
gttattttggattctggagattctataaagttgaaaccgggtatgattgtaagccagcga
caacttagagatgaaaattcatcattgaagaggcaggataaaaagatagtccaggtaaga
gatgctgaaccagcattggctaaacctacattacaaggaattacccaatcgtcattaggg
acagaaagtttcttgtcagcggcatcattccaggagacaactaaagtacttagtgaagct
tctatcagaggaaagcgtgacgaacttaaaggattgaaagaaaacattattgttggacat
gcaatcccggcaggtacaggcatacgcacttatgaaaggattattgttcactctaaagaa
gaatatgatcaattgaagtcgtctcgggaaagtaagaaagaagaaaccagaagcacaatg
gaagcaaatagttaa
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