Catalinimonas niigatensis: PZB72_20420
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Entry
PZB72_20420 CDS
T10977
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cnq Catalinimonas niigatensis
Pathway
cnq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cnq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PZB72_20420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cnq03019
]
PZB72_20420
03009 Ribosome biogenesis [BR:
cnq03009
]
PZB72_20420
Enzymes [BR:
cnq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PZB72_20420
Messenger RNA biogenesis [BR:
cnq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PZB72_20420
Ribosome biogenesis [BR:
cnq03009
]
Prokaryotic type
rRNA helicases
PZB72_20420
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
PTP-SAK
Helicase_RecD
CsoSCA_N
Motif
Other DBs
NCBI-ProteinID:
WPP49035
LinkDB
All DBs
Position
4903361..4905040
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AA seq
559 aa
AA seq
DB search
MTKFEALGLREEILKSLSELKFEQPTPIQEQAIPFVLNSDNDLIAFAQTGTGKTAAFGLP
IIQQIDDHTDKTQALILSPTRELCLQISNDLATYSKYLKHLNVVPVYGGVDIEKQMKQLK
SGAHIVVGTPGRVLDLIKRKRLKVENINCLVLDEADEMLSMGFKDELDAILANTPQDKQT
LLFSATMPREMMAIAEKYMHNPEEISVGKRNAGADNVQHQFIPVHAKDRYEVLKRIVDIN
PNMYGIVFCRTRNDTREIADHLMKDGYNADALHGDLSQAQRDVVMNRFRMKNLQLLIATD
VAARGLDVNDLTHVINHSLPDDPEVYVHRSGRTGRAGRSGICLTLVHGRDKGKLKQIERT
VNKKFEQIRVPSGRDICEKQLFTLIDKVEKVEVNPEIEKYLPAIISKLSWMSQEDLISHF
VSMEFNQLLEHYKNSPDLNASFSSEREKRGRTGREERGREDRKEKRDRKPKKGSTSNGST
FSRFFMNLGKKDNMSPKTIIGMVNRHMPDDSVKIGQIEVLNNFSFFEIERSYEKDVLDAL
QHATHKGKDLGIEIAKEKA
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaatttgaagcgctgggtttgcgcgaagaaattttaaaatctcttagtgagtta
aaatttgaacaacccacccccatacaggaacaagccattcctttcgtcctgaattctgat
aatgatctgattgcttttgctcaaactggtactggtaaaacagccgcatttggcttacct
atcatccagcaaattgatgatcatactgacaaaactcaggccttgatattatcccctaca
agggaactgtgtttacagatttctaatgatctggccacatattccaagtacctgaagcat
ttgaatgtagtaccagtatacggaggggtagatatagaaaagcaaatgaagcagctaaag
tcaggagctcatattgtagtgggtacacctggacgtgtgctggatctgatcaaacgtaaa
agattgaaagtagaaaatatcaattgccttgtactggatgaggctgatgagatgttatct
atgggttttaaggatgaactggatgccattttggccaatactccccaggataaacagacg
ttactattttcagctaccatgcccagagaaatgatggccattgctgaaaagtatatgcac
aatcctgaagagattagcgttggcaagcgtaatgctggtgcagacaatgtgcagcatcaa
tttatccccgtacatgccaaagatcgctatgaagtgctgaagcgcattgtggatattaat
cccaatatgtatggtatcgtattttgccgtacccgtaatgatacccgtgagattgccgat
catctgatgaaagatggatataatgcggatgctttgcacggagacctttctcaggcgcag
cgtgatgtggtaatgaaccgttttcgcatgaaaaatctacaactgttgatcgctaccgat
gtagcagcccgaggcctggatgtcaatgacctgacccatgtaatcaaccatagccttcct
gatgatcccgaggtatacgtacaccgcagtggccgtactggtcgtgctggtagaagtggt
atctgcctaacgctggtacacggcagggacaaaggcaagcttaagcagatagaaaggaca
gtcaacaaaaagtttgagcagataagggtgcctagtggtagggatatttgcgagaagcaa
ctctttaccttgattgacaaggtagaaaaagtagaggtaaatcctgaaatagaaaagtac
ttacctgccattatcagcaaactttcctggatgagccaggaggatctgatcagccacttc
gtctccatggagtttaaccaactgctggagcattataaaaactctcctgatctgaatgct
tctttctcctcagaaagagaaaaaagaggtagaacaggaagagaagaaagaggtagagaa
gatcgcaaagaaaagcgggatcgtaagcctaaaaaaggttctaccagcaatggatctact
ttttcccgtttctttatgaatttgggtaaaaaagataatatgtcacctaaaaccatcatt
ggtatggtcaatagacatatgcccgatgactccgtgaagattggtcagatagaggtgctg
aacaacttttccttctttgaaatagaaagaagttatgagaaagatgtactggatgcactg
caacatgcaacgcataaaggtaaagatctaggtatagagattgcaaaagagaaagcataa
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