Catalinimonas niigatensis: PZB72_26655
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Entry
PZB72_26655 CDS
T10977
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
cnq Catalinimonas niigatensis
Brite
KEGG Orthology (KO) [BR:
cnq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cnq03032
]
PZB72_26655 (topA)
03400 DNA repair and recombination proteins [BR:
cnq03400
]
PZB72_26655 (topA)
Enzymes [BR:
cnq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PZB72_26655 (topA)
DNA replication proteins [BR:
cnq03032
]
Prokaryotic type
DNA Topoisomerases
PZB72_26655 (topA)
DNA repair and recombination proteins [BR:
cnq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PZB72_26655 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Motif
Other DBs
NCBI-ProteinID:
WPP50251
LinkDB
All DBs
Position
complement(6470727..6473075)
Genome browser
AA seq
782 aa
AA seq
DB search
MPKNLVIVESPAKAKTIEGYLGKDYVVASSYGHIRDLPKDDKAIDIKNNFKPTYAVSSDK
KEVIAQLKKLVKASDIVFLASDDDREGEAISWHLKEELKLKDESTRRIVFREITKTAILN
AIQSPRKIDLDLVNAQQARRILDRLVGFELSPVLWKKIKRGLSAGRVQSVAVRLVVERER
EIKDFETKSSYKVTAEFLVDQTSVLKAELPKRFDTEEEAQAFLEACLNAEFHIQKLEKKP
VKKSPAPPFTTSTLQQEASRKLGFSVSQTMTLAQRLYEAGKISYMRTDSTNLSEEALEGA
SKEINANYGGKYLHKRTFKTKSESAQEAHEAIRPTDFSSKEAGKERNEQRLYELIWKRAI
ASQMADAEIERTIVTIAIDFKNSVKENLPSYLTATGEVIQFDGFLKVYIESTDDEENDED
RKGMLPPLKEGQKLVLDFMKARQGFSRHSPRYTEASLVKKLEEMGIGRPSTYAPTISTVQ
KRGYVLKEDRAGTERKYKELTLTKKDNKIDNQTLTEITGTEKKKLFPTDIAMVVNDFLTE
YFENIIDYSFTARVEKEFDEIAQGKKEWVQMLDEFYTKFHSKVESSEQIDRSQVKNDRLL
GEDPKTGLPVIARLGKFGPMVQLGEMDAEEKPKFASLRKGQFIETITLEEAMELFKLPRE
VGEYEGEAIVANIGRFGPYVRHKNLFASLPREEDPLSIDIDRAIELIDAKRKADAEKYIK
VFDENADVQVLKGRYGPYIKAGKKNVKIPKDKEPSELTLEECLELAEKAPEKKGRAKGKA
KK
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atgcccaagaacttagtaatagttgaatcacccgcaaaagcgaaaaccatagaaggatat
ttaggaaaagattacgttgtggcctcaagctacggacatatacgcgatctcccaaaagat
gataaggctattgatattaaaaataattttaaaccaacttatgctgtttcttctgataag
aaggaggtaattgcacagttaaaaaaattagtcaaagcttctgacattgtttttctagcc
agtgatgatgaccgtgaaggtgaagccatatcatggcacctcaaagaagaacttaagctg
aaagatgaaagtacccgccgtatcgtttttagagaaattaccaaaacagccatattaaat
gccattcagtctccaagaaagatagatctggacttagtcaatgcacagcaggcacggcgt
atattagaccgcctggtgggctttgagctttcacccgtactttggaaaaaaatcaaaaga
ggcctctctgccggacgtgtacaatcggtagctgtaaggctggtggtagagcgggaacgt
gaaatcaaagattttgaaacgaagtcttcttataaggtaactgctgaatttctggtggat
caaaccagtgtgcttaaggccgaacttcctaagagatttgacaccgaagaagaagcccag
gctttcctagaagcttgcctgaatgcggagtttcatattcaaaagctggaaaaaaagccg
gtaaaaaaatcgcccgctccgccctttaccacttctaccctacaacaggaagcatcccgt
aagttggggttttctgtttcccagaccatgacgctggcacagaggctttatgaggccggt
aaaatcagctatatgcgtactgactcaaccaatctttctgaagaagcactagagggtgcc
tccaaagaaatcaatgccaattatggaggtaaatatctgcacaagcggacttttaagacc
aaatctgagtcagcacaggaagcacacgaagcgatcagacctactgatttttcttctaaa
gaagctggaaaggaacgcaatgagcaaagactctatgaactgatttggaaaagagccatt
gcttcacaaatggctgacgctgagatagagagaaccatcgtgactattgccattgatttt
aaaaattctgtgaaagaaaacttaccaagctatttaacggctacgggtgaagtgatccaa
tttgacggttttttgaaagtttatattgaatcaacggatgatgaagaaaacgatgaggat
cgtaaaggtatgttgcctccgctcaaggaagggcaaaaactagttttggattttatgaaa
gcacgccagggtttctcccgtcattctccccgttatacagaagccagtctggtgaaaaaa
ctggaagagatgggcattggcaggccttcaacctacgcacctacaatttctaccgtgcag
aaacgtggctatgttttgaaagaagatcgggcaggtactgagcgtaaatataaagagctt
actctgaccaaaaaggataacaaaatagacaatcaaacccttaccgagattacaggtaca
gaaaagaaaaaacttttccctactgatatagcgatggtggttaatgactttcttaccgaa
tattttgaaaatatcattgattattcctttaccgcccgggtagaaaaagaatttgacgag
atagcccagggtaagaaagagtgggtacaaatgctggatgaattttatacgaagtttcat
tctaaagtagagagttcagagcagatagacaggtcacaggtgaagaatgatcgtctgtta
ggtgaagatccaaaaaccggtcttccagttattgcacgtttgggtaaatttggtcctatg
gtacaattgggcgagatggatgctgaagaaaaacctaaatttgccagcctgagaaaagga
cagttcatagaaaccattacgctggaagaagccatggaactgttcaaactgccccgagag
gtaggtgagtatgagggtgaagcaatcgttgccaatatcggacggtttggcccttatgtg
aggcacaaaaatttgtttgcctccctaccaagagaggaagatccattatccatagatatt
gaccgggctatagaattaattgatgctaaaagaaaagctgatgctgagaagtacattaaa
gtatttgatgaaaatgctgatgtacaagtcctcaaagggcgctatggcccttatataaag
gctggtaagaagaatgtcaaaataccaaaagacaaagagccttctgaactgacgcttgag
gaatgtctggaattggcagaaaaagcccctgagaaaaaagggcgggccaaaggcaaggcc
aaaaaataa
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