Contarinia nasturtii (swede midge): 116337120
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Entry
116337120 CDS
T08003
Name
(RefSeq) enhancer of mRNA-decapping protein 4 homolog isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
cns
Contarinia nasturtii (swede midge)
Pathway
cns03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cns00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116337120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cns03019
]
116337120
Messenger RNA biogenesis [BR:
cns03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116337120
mRNA degradation factors
5'-3' decay
Decapping complex
116337120
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
Motif
Other DBs
NCBI-GeneID:
116337120
NCBI-ProteinID:
XP_031617308
LinkDB
All DBs
Position
Unknown
AA seq
1264 aa
AA seq
DB search
MPLLFLISELVHSKYFDSAANSFLLRLFNFYKYICKQMMDTPKIVAAKDNITFKKVTFDG
GEQSAYETDGASVVVVGSSGSHDHGSSKIKLKNIVDYKWEVKNYIGRLIAVHLDGKYVAY
AIKVAGKKGNIEGMVRVRVANPNTGSRALIRGKSSEVLDLQFAHMKSQIMLASIENTALH
IHKIETINDNIICTLQLKIDDPVEGHVSKFDKINWCPYVPENETETDNDAGKLLVWTRGT
SFQCYNVGTVVDNYGIGTHHANDITEGSLKFYEVSAITDASLSPDGTTLAITLEDGDIRF
YQVYFHCNEDEPRLLHQWTPHEKKPVSGLFFLDDHTKSAAGSSLWKYAITASDNNTEFKV
WCCSSWECLQTIRFEASDGKPMFFKTEIDPTSSYLVLTDAKSRNLYVMQILQEEDAKSDV
AEVGQNGSQNGTKPYAFIKSITEFPVSSPILSFNIVDATVRKYKCAYNDVYLLEDLDDYD
EDNLNRYCVVIHLFLVQPKSVQECHVLYQPSLSVDADVGSSISVLSDSGNNDREEEALVN
DLASMLSITKSSSQDDSSGSSISSVSKSNVQIRALLDSASSASGTENSSNVTKTTELSKG
EINKPSSALNLLTPDSFHSSGKITPEGVSNEVYSTLRMLAGEKPVESSKKPLLLVNNKQG
SDESDKVQLMQQVSEESNNGNNEKLSEIVPPLPPASMLNTGVSGGSSPSREVQEILSQKG
SDCINDFYSNSIDIQDDTDASGNNCDAADGNDEEKNSNQDDDETYTLNNVTESANQASAI
TAPSKIDWPDAPTTMQTFSHNPVATETINDINIKLDQLMEIIQTQNCQLSELRSEVADLK
KSQSNAVATSKQTQNVDINIQKLEHRVSRLVEEYLSRNEREQNKRLENFLMTRDNQVREN
IVMGLGPVLCNQLSSQLAQVFVTEIQKHLLPVVGARLDGIKAQIQSEIAQKLTITDKVIK
ENISNICKSKETSDIFGHAVVNGIKSGLQQIYIESMRSVILPAYEKANAELFKQLYDTFN
KGTIAYANQMANYTKMYEPIHAELINIMQTVPEQLRSLNEASVNVCTQRVSNEINKDIKT
MQVNLLKTLKENIKMEIKKGFETQAANLEDSVMMAVRSQAQTPAPSVFDVQEQIKALLHQ
GQVNKAFHQALQANDLHLVEYVLERADINQVFNPCSLEQTVLLSLIQQISADMLNHSELK
QKYLSDAIINLNMRDQITKEHSPKVLKDLLSNCQIYLSANPHSPLSSNVRVLIMAVQGFG
ITSM
NT seq
3795 nt
NT seq
+upstream
nt +downstream
nt
atgccattgctttttttaatatccgaactagttcattcgaagtattttgattcagcggca
aactcatttttactcagactattcaatttctacaagtatatttgcaaacaaatgatggat
acaccgaaaattgttgcagctaaggacaacataaccttcaaaaaagttacgtttgatggg
ggagaacagagcgcatacgaaactgatggtgctagtgtagttgtcgtaggcagttcagga
tcgcacgaccacggtagctcgaaaattaaattgaaaaatatcgtcgattacaagtgggag
gtgaagaattacatcggtcgtttgattgcagtacatcttgatggaaaatatgttgcgtat
gcaattaaggtggctggtaaaaaggggaacatcgaaggaatggtacgcgtacgcgttgct
aatccaaatacaggctcgcgcgctttaattcgcggaaaatcaagcgaagtacttgatttg
cagtttgcccacatgaaatcccaaattatgttggcttccattgaaaataccgcactacat
attcacaaaatcgaaaccatcaacgacaacataatttgtacgttgcaactgaaaattgat
gatccagtcgaaggccatgtgtcaaaatttgacaaaatcaattggtgcccgtatgtacca
gaaaatgaaacagaaactgacaatgatgctggaaaactgttggtttggacacgtggcacc
agttttcaatgttacaatgttggaacggttgttgacaattatggcatcggaacacatcat
gccaacgatataaccgaaggctcattgaaattttatgaagtttctgctataactgatgct
tcactctctccagacggaacgacattggctataacccttgaagacggtgatattcgcttt
tatcaagtttattttcattgcaacgaagatgaaccacgacttttgcatcaatggacacca
catgaaaaaaaacctgtgtctggcttattctttttggatgatcacaccaaatctgcagct
ggaagttccctttggaaatatgccattacggcaagtgataacaatactgaatttaaagta
tggtgctgttcgtcgtgggaatgtttacaaaccattcgattcgaagcatcagatggaaaa
ccgatgtttttcaaaacagaaatcgatccgacttcatcgtatcttgtactaactgatgcc
aaaagtcgaaatttatatgtgatgcaaattttacaagaagaagatgccaaatccgatgtg
gccgaagtgggtcaaaatggaagtcaaaatggaacaaaaccgtatgcatttataaaatca
atcactgagtttccggtgtcgtccccaattctttcatttaatatcgttgatgcaactgtt
cgaaaatataaatgcgcttacaatgatgtttacttactcgaagatctcgatgattatgac
gaagacaacttgaatcgatactgtgttgtgattcatttgtttttggtgcaaccgaaaagc
gtacaagaatgtcatgtgctgtatcaaccttctttgagtgtagatgctgatgttggtagc
tctatatctgtactgtccgatagtggaaataatgatcgtgaagaggaagcactggtaaac
gatttggcctcaatgttgagtataacgaaatcgtcttcgcaagacgactcgtcgggaagt
tcaatatcaagtgtatcaaaatcgaatgttcaaatccgggcattgcttgattcggccagt
agtgcaagtggtacggagaattcgtcaaatgtgaccaaaacgactgaactaagcaagggt
gaaataaataaaccatcatcagctttaaacttgcttactccagattctttccattcatct
ggtaaaattacaccggaaggcgtcagcaatgaggtttactcaaccttacgtatgttggct
ggtgagaaaccagtggagagctccaaaaaaccactacttttggtgaacaacaagcaaggc
agcgacgaatctgacaaagtacaactaatgcaacaggtttccgaggaaagcaataatggc
aataatgaaaaactttcggaaattgtgcccccattaccaccggcatcaatgctcaacact
ggcgtttccggtggttcaagtccaagtcgtgaagtgcaagagattctctcacaaaagggt
tcggattgcattaatgacttctacagtaattccattgatattcaagacgatacagatgca
agcggcaacaattgtgatgctgccgatggcaacgatgaagaaaaaaatagcaatcaagac
gatgacgaaacgtatactctgaacaatgtgaccgaatctgctaatcaagcaagtgctatt
accgcaccaagcaaaattgattggccagatgcaccaactacaatgcaaacattcagtcat
aatccagtagccactgaaacaatcaacgacattaacatcaaattagatcaactgatggaa
atcatacagacgcaaaattgccaattatcggagcttcgtagtgaagtggctgatttgaag
aagtctcagtcgaacgctgtagccacatcaaaacaaacacaaaatgttgacattaatata
cagaaacttgaacatcgtgtatcacgtttggtcgaagaatatctttcacggaacgaacgc
gaacaaaacaaacgccttgaaaacttcttgatgacacgagacaatcaagttcgtgagaat
attgtaatgggactgggtccggtgttgtgcaatcagttgagcagccaattggcgcaagta
tttgttacagaaattcagaaacatctgctgccggtcgtgggcgctcgtttggatggaatc
aaagcacaaattcaatctgaaatcgcacagaagctcaccatcaccgataaagtcatcaaa
gaaaatatatcgaacatttgtaagagcaaagaaacgtctgatatttttggccatgccgtt
gtaaatggcataaaatcgggattgcaacaaatctatattgaatccatgagatctgtaatt
ttgccggcatacgaaaaggccaatgctgaactcttcaaacaactttatgacaccttcaat
aagggaaccatcgcatacgccaaccaaatggcaaactacacaaaaatgtatgagccaatt
catgctgaattgataaacattatgcaaacggtaccagaacaattgcgaagtttaaacgaa
gcatcggtcaatgtatgtactcaacgtgttagcaatgaaatcaacaaagatatcaagaca
atgcaagtgaatctcttgaaaacgctgaaagaaaacattaaaatggagattaaaaaaggt
ttcgaaacacaggcggcaaatttggaagattcggtgatgatggcggtacggtctcaagct
caaacacccgcaccaagtgtatttgatgtgcaagaacaaatcaaagcattgttgcatcaa
ggtcaagtcaacaaagcgttccatcaggcattgcaggcaaacgatttacatttggttgag
tacgtccttgagcgtgccgatattaatcaagtattcaatccatgctcgctcgaacagacc
gtcttattgtcgttgatacaacaaatatcggccgatatgttaaatcacagcgaactgaag
caaaagtatttgtccgatgccataatcaatttaaatatgcgtgatcaaatcaccaaagag
cattcgccaaaagtcctcaaagatctactatcaaattgtcaaatctatttgtcggccaat
ccacatagtccactcagcagtaatgttcgtgtgctcattatggctgttcaaggttttggc
atcacttctatgtga
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integrated database retrieval system
