Contarinia nasturtii (swede midge): 116337289
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Entry
116337289 CDS
T08003
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
cns
Contarinia nasturtii (swede midge)
Pathway
cns03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cns00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116337289
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cns03019
]
116337289
Messenger RNA biogenesis [BR:
cns03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116337289
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
116337289
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
NOT1_connector
ARM_Cnot1
DUF3819
CNOT1_HEAT
CNOT1_1st
SPAN
DUF447_C
Motif
Other DBs
NCBI-GeneID:
116337289
NCBI-ProteinID:
XP_031617580
LinkDB
All DBs
Position
Unknown
AA seq
2379 aa
AA seq
DB search
MNQEALSFSLTQINYLVSTLKKKNFDQNSRQIESLVKPFGLEADRHLLRCLFSSVDFTEA
NNQTAKKSLQARLLKQELNTVLSKSSLITNICFAIDNCFIKQKTLKPSPNLFSQLFKALN
CSPILEVVISLALTYSKNPEFVRLAENQLKVCLPSLIQSYVELDTNQSTPEGGLSDISPE
LLQLVLSLLSHDKYKNYDITELTYKKFITQISGDFPRERCPLILAPLIYRENTEISAEKM
SANSQGILTTAIMDTSWPNLVMDIGYAFTASKEECKNHLTKFSGRELSAQDVAKIIALMC
RTHENLSELSINLPNPSTFWPSTNNDSASGGQDSGEKNHMTEHTAWKPDVFVQALMDVVP
TMNWKEICIAFDHGDFIIKDRGALVLLMTIVELGMQTSGGGKQFPVDIIYRMWTNTQGQL
SLIGMILKSPDVYSFADNIFKSVAIESFKVQPENDSKEIIAWRSIHLIEILLFIAEKGYY
PQVLEHFKVPMQHCPDILFMALLQIGPPMTVLVQEMFQSLLPIFFGTHPNSIPILSHAWN
STKFNNFSLRHIINHSMSDWYVRGGATDNVDQTRLIRILDLANELGSLSSLLNVRSFQFV
IDLAVAASRREFLKLDKYLTEKIRENGEQFVQSIISYLQRRCPQITGAKILDDHLTKVSQ
LPHEILSTIINCLQPCIGNVQQDLNDAIVQLTTNCNILLNKQRQQQQQQQHQQQQQLMPL
QGLFRRSIDTNLMSSVAGSNFGGPSMDSISGLSSNLAGMNLSGPSTGGSFNFNTNLMNNL
VTTPASPSHLLQQVQPNSPFQMPPMPLGSGLRPPVNNNIGRIPVSPSSDKVNIAAITTNN
PSFSENTPKATNEIEEEANGYFIRIYNHSPHESLSIDEVLDILQRFSKSTVEREREVQQC
MVRNLFEEYRFFHEYPDKELQITAELFGGIIERNLVPTVQQLGIALRYVLEALRKPEGSK
MYHFGITSLDRFKSRLYMYSDYCEHVQQIPTFNKFPAHLIEYVKFGIDGSQPPNKPQGPT
PLAQANAAALYRSSSETGKNAYTTPTKASKTAQTFTGTNLNTLLVANSDRCRKIIHPPSA
VQDKTAFIFNNLSVTNVPDKCAELKKFLTKDFFPWLSQYMVLKRVSIELNFHTVYSNLLD
ELKNQEIIELVTDETFRNIRVLLSSDKGIENFSDRSLLKNLGHWLGVMTLGRNRPILHID
LDLKSLLLEAYHRGQQDLMYVVPFVAKILESCAKGKVFKPPNPWTMGLMNVLGELHQEPD
LKLNLKFEIEVLCKTLSIEVADLKPGIYLRDPERFNNIEHQLSVIKKEEQKKSPIPQIPQ
IPIQPQIPTESPNQNSEIPEAKFNFNDISIGNIKNLAQHLVFSPNLSIFHTHQQLKAVVQ
VAIERSISECLVPVVERSVRIAVTTCEQIMRKDFALDPDETEVRKAAHYMVRNLSAGMSM
ITCRDSLNQVIQKNIVASFAQSMLMNAHELNEMAIQIANDNTELTCVFIQKTATEKAVAE
VEKRLAADFDARKAARQEGRRHYDASVLTYQTTRMPEPIRLKVGDIPSEHFTVYEAFGRN
IPGFQPMTDRDAAILYDKTITSQTTIPTFASVTESNPIPATAPPMSSGNEMGSKLDELIA
RMDAFVASVNYAPGLLVHMRNTRALVECIMAAKRANNELSTVNLINRAVDNIFECVTTQT
SLLKTHYRALHLDLLTWMNDERAYGPKFTQQFVTMRMIDCREDIRYNLEAVELLLATNLA
NVLQYDCMLSTLLDSGNFLAISFSMQLMQRLFVDDRQKIRFTEKDFTNTIETLSRLSTMQ
RSPEGLPHLIEMLRMSTDAMGIDRVTTGPTSHIHSGISQVRSIEFNDPGMAEKVEFLLKD
WANNYHVSASGSRDAKSFSSFVNKLNLYGVLKTDELITRFFTKATQWCIELSRNLHDPTA
SSQQNKAKVFHYIDAFIRLIALIVKYSGDNPNSATKINLLNKILGIIVGVLLHDQEQHGT
SFQQLGYHRFFIMLFLELSAPELESISLSVSTAFCHTYHILRPSVAPGFCYSWLELISHR
VFIGRVLALTPQQKGWAMYSQLILDLFRYLAPFLRNAELAKPVQLLYKGTLRVLLVLLHD
FPEFLGDYHFAFCDVIPSNCIQLRNLVLAAFPRNMRLPDPFTPNLKVDMLNDITASPRVF
ANFVSNIQPTSFKNELDSYLKARAPVTFLSELRGRLQVSNTSGSKYNTQLMNALVLYVGT
QAIDHIRSKNLVPNMTTIVHCSHMDIFQNLIVDLDHEGRYLFLNAVANQLRYPNSHTHYF
SCTLLYLFVEANSEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPIYKFWEHDFVH
CAPEIEKLFESVARSCMVKTSGARSGSSQQPGNEIQECN
NT seq
7140 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaagcattatcattttcattgacgcagattaattacttggtttctaccttg
aagaagaagaattttgaccaaaattcacggcaaatcgaatcgctcgttaaaccgttcgga
ctagaagcggatcgacatcttctgcgttgtttgttctcatccgtggatttcacggaggcc
aacaatcaaacggcaaaaaagtcactgcaagcaagactactcaaacaagaattgaacact
gtgctcagcaaatcgtcgttgattacaaacatttgttttgccatcgacaattgttttatc
aaacaaaagacattgaaaccaagtcccaatttattcagtcaattgttcaaagcgttgaat
tgttcaccgatacttgaagtggttatttcattggcgcttacctactcgaaaaatcccgaa
tttgtccgcctagccgaaaatcaactcaaagtttgtttgccatcattgatacaatcctat
gtggaattagataccaatcaatcgactccagagggcggtttatccgacatatcgcctgaa
ttattacaattagtgctatcgttattgtcgcacgataaatacaaaaattacgatataacc
gagttgacctataagaaatttatcacacaaattagtggcgattttccacgtgaacgttgc
ccattaattttggcgccattgatttatcgagaaaatacagagatttccgctgaaaaaatg
tccgccaattcgcagggcattttaacaacggctatcatggatacatcatggccaaatctt
gttatggatattggttatgcatttacagcgagtaaagaagagtgtaaaaatcatttgaca
aaatttagtggacgtgagttatctgcacaagatgtggcaaaaatcattgcattaatgtgt
cgaacacatgaaaatttatcggaattgagtattaatttgccgaatccgagtacattttgg
ccatcaacgaataatgacagtgcatccggtggccaagattcaggtgaaaaaaatcatatg
accgagcacacggcatggaaaccagatgtattcgttcaagcgttgatggatgttgtgccg
acaatgaattggaaagaaatttgcattgcattcgatcatggtgattttatcattaaagat
cgtggcgcacttgtgctactcatgacaatcgttgagcttggcatgcagaccagtggtggc
ggtaaacaatttcccgttgatatcatttatcgcatgtggacaaatacacaaggtcaacta
tcgcttattggcatgattctgaaaagtccggacgtttattcatttgctgataacatattc
aaaagtgtggcaattgaatcgttcaaggtacaacccgagaatgatagcaaagaaattatc
gcatggagatcgatacatttaattgaaattttactgttcattgctgagaaaggatactat
ccacaagtattggaacacttcaaagtgcccatgcaacattgtccggatattttattcatg
gccctattacaaattggtccgccgatgacagttttggtgcaagagatgtttcaatcgttg
ttaccaattttctttggtactcatccgaattcgattccgattttgagtcatgcatggaat
tcaacgaaattcaataatttttcactgcgacacatcatcaatcattcaatgagcgattgg
tatgtacgtggcggtgctaccgataatgttgatcaaacacgtttgattcgcattctcgat
ttggccaatgaactgggttcattatcaagcttattgaacgttcgatcatttcaatttgtt
attgatttggcggtggcagcgtcgagacgagaatttctaaaattggataaatatttaacg
gaaaaaatacgggagaatggtgaacaatttgtacaatcgattatctcatatttacaacgt
cgttgtccacaaattactggcgccaagattctcgacgatcatttaacaaaagtatcacaa
ttaccacatgaaatactatcgacgataataaattgtttgcaaccatgcattggaaatgtt
caacaagatttgaacgatgcaattgttcaactgacaaccaattgtaatattttgttaaac
aaacaacgacaacagcaacagcagcagcagcatcaacaacaacaacaactaatgcccctt
caaggcctgtttcgtcgtagcatagacactaatcttatgtcgtcggtggctggatctaat
tttggtggtccatcgatggattcgatatctggtttgagttcaaatttggccggtatgaat
ttaagcggcccatcgactggtggatcatttaatttcaatacaaatctaatgaacaatttg
gtaacgacgcctgcatccccatcgcatcttctacagcaagttcaaccgaatagcccattt
caaatgccaccaatgccattgggcagtggtttacggccacccgtaaataacaatatagga
cgaattccggtgtcgccgagcagcgataaggtgaatatagcagcgataacaacaaacaat
cccagtttttccgaaaacacaccaaaagcaacaaatgaaatcgaagaagaagcaaacggc
tattttatacgaatttataatcattcgccgcatgaatcgttgtccatcgacgaagtgtta
gacatattgcagcgtttcagtaaatcaacagttgaacgggaacgtgaggtgcaacagtgt
atggtacgaaatttattcgaagaatatcgtttcttccatgaatatcccgataaagagcta
caaatcaccgctgaactatttggtggtattattgaacgtaatttggtgccgacagttcaa
caacttggtattgcattgcgttatgtattggaagcacttcgaaagccagaaggatcgaaa
atgtatcactttggcatcacttcgttggatcgattcaagagtcgactttatatgtattcc
gattactgtgaacacgttcagcaaattccaacatttaacaaatttccagcccatctaatt
gaatacgttaaatttggcatagacggtagtcaaccaccaaataaaccacaaggtccaacg
ccacttgcacaagcaaatgcagcggcattatatcgcagtagttcggagactggaaaaaat
gcttacacaacaccaacaaaagcgtccaagactgcccaaacgttcacgggtacaaatttg
aatacattactggtggcaaattcggatcggtgtcgaaaaatcatccatccaccgtccgct
gtgcaagataagacagcatttattttcaataatttgagcgttacaaatgtgcccgataaa
tgtgctgaactcaagaaatttcttaccaaagatttttttccatggttgtcacagtatatg
gtgttgaaacgggtatcaatcgaacttaattttcacaccgtctattcgaatttattggat
gagttgaaaaatcaggagatcattgaattggtgaccgatgaaacgtttcgcaacattcgc
gttctattgagttcggataaagggattgaaaatttctccgatcgaagcctattgaaaaat
cttggccattggttgggtgtgatgacattgggccgaaatcgtccgattctacacattgat
cttgatttaaaatcgctactgcttgaagcctatcatcgtggtcaacaagatctaatgtat
gtggtgccatttgtggcaaaaattcttgaatcatgtgccaaaggtaaagtattcaaacca
ccgaatccatggaccatgggcctgatgaatgtattgggcgaactgcatcaagagccagat
ctcaaattaaatcttaaatttgaaattgaagtgctgtgcaaaacattatcaattgaagtg
gccgatttgaaaccgggaatatacctaagagatccggaacgattcaacaatattgaacat
caattgtcggtaataaagaaagaagaacaaaaaaaatcaccgataccacagataccacag
attccaatacaaccacaaataccaaccgaatcaccgaatcaaaacagtgagatacccgaa
gcgaaattcaatttcaacgacatttcgattggaaatatcaaaaatctagcacaacatctt
gtattttcaccaaatcttagtatattccatacgcatcaacaattaaaagctgttgtacaa
gtggccattgaacgatcgatcagtgaatgtcttgtgcccgttgttgagcgcagcgttcgc
attgcggtcacaacatgtgaacaaattatgcgcaaagattttgcattggatccagacgaa
acggaagtacgaaaagccgcacattatatggttcgaaatttatcggccggcatgtcaatg
atcacatgtcgcgattcattgaatcaagttatacagaaaaatatagttgcatcgtttgca
caatcgatgcttatgaatgcgcatgaattgaacgaaatggccattcaaattgcaaacgat
aatacggaattgacgtgtgtatttatacagaaaacggccaccgagaaagcggttgctgaa
gttgaaaaacgattggcagccgattttgatgccagaaaggcggctcgtcaagaaggaagg
agacattatgatgcgtctgttttgacgtatcagacgacccgaatgccggaaccaatccgc
ttgaaagttggcgacattccaagtgaacactttaccgtgtacgaggcatttggtcgaaat
attcctggtttccaaccgatgactgatcgtgatgcagcaatactctatgataaaacgatt
acttcacagacaacaatacctacatttgctagcgtaaccgaatcgaatccgataccagcc
acggcgccgccaatgagcagtggcaatgaaatgggttcaaaactggatgagttaattgca
agaatggatgcattcgtggctagtgtcaactatgcacccggccttcttgtgcatatgaga
aatacacgtgcattggtcgaatgtataatggctgcaaagcgtgcaaacaatgaactaagc
acagtgaatttgatcaatcgagcggttgataatatatttgaatgtgtcaccacacagacc
agcctattgaaaacacattaccgtgccctgcacttggatctattgacatggatgaatgat
gaacgtgcatacggtccaaagtttacgcaacaatttgtaacaatgcgtatgattgattgc
cgtgaggatattcgttataatttggaagctgttgaactattgcttgcaacaaatttggcc
aatgtattgcagtatgattgcatgctcagcacattgttggacagtggtaactttttggcg
atttcattttcgatgcaattaatgcaacgcttgtttgtcgatgatcgacaaaagatccga
ttcaccgaaaaagattttacaaatacaattgaaacattgagtcgattgtctacaatgcaa
cgttcaccagagggactaccgcatttgattgaaatgttgcgcatgtctaccgatgcaatg
ggcattgatcgtgtcacaactggaccaacgtcacacattcattcgggcatttcacaagtg
cgttcgattgaattcaacgatccgggaatggctgaaaaggtggaatttttattaaaagat
tgggcaaacaattatcatgtcagcgcaagtggtagccgtgatgcaaaatcatttagttca
tttgttaacaaattgaatttgtatggcgtgctgaagaccgacgaattgataacacgtttc
tttacaaaagccacacaatggtgcatcgaactgagtcgtaatttacacgatccaacggcg
tcgtcacaacagaacaaggccaaagttttccattacattgatgcttttattcgtttgatt
gcactgattgtgaaatattccggtgataatccgaattcagcgaccaaaattaatttactc
aataaaattcttggcataattgtcggtgtattgttgcatgatcaagaacaacatggcaca
tcattccaacagcttggctatcatcgtttctttattatgctgtttttggaattgagcgca
cccgaattggaatcgattagcttaagtgtatcgaccgcattctgtcacacataccacatt
ttacggccatcagttgcacccggtttttgctattcatggcttgagctcatttcgcatcgc
gtttttatcggtcgtgtcttggcgttgacaccacaacaaaaaggatgggcaatgtactca
caattgatattggatctgttccgttatttggcaccatttttacgtaacgctgaattggcc
aaaccggttcaattgctgtacaaaggaacgttacgtgtgttgctcgttttgttacatgat
tttccggaatttttgggcgattatcattttgctttttgtgatgtgatcccatcgaattgt
attcaattgcgaaacttagttttggcagcattcccacggaatatgcgtctaccggatcca
tttacgccaaatcttaaagtcgatatgctaaacgatatcaccgcatcaccaagagttttc
gcaaactttgtaagcaacattcaacccacctctttcaaaaacgaattggactcatatttg
aaggcacgagcaccagtcacattcttatccgaattgcggggacgtttacaggtatcaaat
acatcgggctcaaagtacaacacccaattgatgaacgctttggtactctatgttggaaca
caggccattgatcatattcgttcaaagaatctcgtaccaaatatgacaaccattgtgcac
tgttcacacatggacatttttcaaaatttgattgttgatttggatcatgaaggacggtat
cttttcttgaacgcggttgccaatcaacttcgctatccaaatagtcatacacactatttc
agctgcacattgctctatctctttgttgaagccaattccgaagctattcaggaacaaata
acgcgtgttcttttggagcgattgatcgttaatcgtccacatccatggggtttgttgatc
acattcattgaactcatcaaaaatccaatttacaagttttgggaacatgattttgttcac
tgtgcaccggaaattgagaagttattcgaatcagtggcacgttcatgcatggttaaaaca
tctggggcaagatcaggctcatcgcaacaaccgggaaatgaaattcaagaatgtaattga
DBGET
integrated database retrieval system
