Contarinia nasturtii (swede midge): 116337467
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Entry
116337467 CDS
T08003
Name
(RefSeq) probable ATP-dependent RNA helicase DDX27
KO
K13181
ATP-dependent RNA helicase DDX27 [EC:
5.6.2.7
]
Organism
cns
Contarinia nasturtii (swede midge)
Brite
KEGG Orthology (KO) [BR:
cns00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cns03041
]
116337467
03009 Ribosome biogenesis [BR:
cns03009
]
116337467
Enzymes [BR:
cns01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116337467
Spliceosome [BR:
cns03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
116337467
Ribosome biogenesis [BR:
cns03009
]
Eukaryotic type
Pre-60S particles
Helicases
116337467
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
AAA_22
Motif
Other DBs
NCBI-GeneID:
116337467
NCBI-ProteinID:
XP_031617925
LinkDB
All DBs
Position
Unknown
AA seq
826 aa
AA seq
DB search
MDLIKTIEEDAEVENFSDDSDAEVEYQPTKMRRKKKEEFSDSFEFVSSVKQYNHDTWDDL
MKYVKRKARTKTDDKIAETLKNRTDDGLNESDDNDDEENEDEFDLSEDELKHDNLRLKEK
RKKKQRKGLDMPDSDGENNDADFFEEADGSATVSSFYQMNLSRPLMRAIGVLGYTYPTPI
QASTIPIALLGRDICGCAATGTGKTAAYMLPTLERLLYRPANNQSVTRVLVLVPTRELGA
QVYQVSKQLCQFTTIEMGLAIGGLDLKAQETILRQNPDIVIATPGRLIDHIKNTPSFTLD
SIEVLILDEADRMLDEYFAEQMKEIIKSCSRTRQTMLFSATMSEQVKDLAAVSLDKPVKV
FVNTNQTVAFNLRQEFIRIRKRADPKPIENGNKEDNEEGADAGAADDSDEEERSNKKHHR
RGKGPQRRGGKNLQLMKERDEKEREDRDREPILAALICRTFHDHCMIFVQRKRQAHRLHI
LLGLLGIKAGELHGNLTQQQRLESLKQFKEEQIDVLIATDVAARGLDIVGVKTVINFNMP
LSTEHYIHRVGRTARAGRAGISVSLADERERKLVKDIIKSAETPVKNRIIPTEILDKYTK
KMEALEPEIRKILNEERDERMFAKMEQQISKQELSLRGMGDRERTWFQSMKKRKQEKERL
DNNFKATEAAKNVNGKRTATTSDLSKLSESKRKKKEEATAKKTPSQMAKQKVRDHQEKIS
FLRAKASKIAHKTKRIRQIDEMNNDRHMANNKNKRVSKFSVDLTNTSRRNTKKLRYDANS
HKKTQKLDAKKKTSKVKLTNKAGENKFNKGKNFRAPRKTGKPGKKK
NT seq
2481 nt
NT seq
+upstream
nt +downstream
nt
atggatttgatcaaaacgattgaagaagatgcagaagtggaaaatttttccgatgattcc
gatgctgaagtcgagtatcaaccaacaaaaatgcgacgaaagaaaaaggaagagttcagc
gatagttttgagtttgtttcgtcagtaaaacaatacaatcatgacacatgggatgatttg
atgaaatatgtgaaacgaaaggcacgtacaaagaccgatgataaaattgccgaaacattg
aaaaatcgtacggatgatgggctgaacgaatcagacgacaatgatgatgaggaaaatgag
gatgaattcgatttatccgaagatgagttgaaacacgataatttgcgattgaaagaaaaa
cgtaagaagaaacaacgcaaagggcttgacatgccggacagtgatggtgaaaacaatgat
gccgacttctttgaagaggctgacggtagcgcaacagtatcatcattctatcaaatgaat
ttgtcgcggccattgatgcgagcaattggcgttcttggctatacatacccaacgccaatt
caagcttccaccatcccaattgctcttttgggccgtgatatttgcggttgtgctgcaacg
ggtacgggtaaaacggccgcttatatgttaccgacacttgaacgtttactttatcgaccg
gccaacaatcaatcggtgacccgtgtattggtattggtgccgactcgtgagctgggcgct
caagtatatcaggtgtcgaagcaattgtgtcaatttacgaccatcgaaatgggtttggca
atcggtggtttagatttgaaagcacaagaaacaatattgagacaaaatccagacattgtt
attgccacaccaggtcgtcttattgatcacatcaaaaatacacccagctttacattggat
tcaattgaggtgctgattttagatgaagctgatcgaatgttggatgaatattttgccgaa
caaatgaaagagattatcaaaagttgttcacgcacccgacaaacaatgttattttcggcc
acaatgagcgaacaagttaaagacttggccgccgtttcattggacaaaccggttaaagtg
tttgtgaatacaaatcaaacggttgcgtttaatttgcgtcaggaatttattcgtatacga
aaacgggccgatccaaaaccaattgaaaacggaaataaggaggacaatgaagagggtgct
gatgctggtgctgcagacgattcggacgaagaagagcgttcgaataaaaagcatcatcga
cgtggtaagggtccacaaagacgtggcggtaaaaatctccaattgatgaaagagcgtgat
gaaaaagagcgcgaagaccgagatcgtgaaccaattttggccgctctaatttgccgaaca
tttcatgatcactgtatgatttttgtgcaacgcaagcgtcaagcgcatcgtttacacatt
ttacttggtttgttgggcattaaagccggcgaattacacggtaatttaacacaacaacaa
cgtcttgaatcgttgaaacaattcaaagaggagcaaattgatgtactgattgcaaccgat
gtggcggcacgtggtttggatattgttggcgttaaaacggttattaattttaatatgcca
ttgtcaacggaacattatattcatcgtgttggtcgtacagcgcgtgctggtcgtgccggt
atttccgtatcattggccgatgaacgcgaacgtaaactagtcaaagatattatcaaaagt
gccgaaacacccgtcaaaaatcgtatcattcctaccgaaattcttgataaatacacaaag
aaaatggaagcactagaaccagaaatcaggaaaattttaaatgaagaacgtgatgaacga
atgtttgcaaaaatggaacaacaaatttccaaacaagaattatcattaagaggtatgggc
gatcgagagcgtacatggttccaatcgatgaaaaaacgcaaacaagaaaaagaacgattg
gataataatttcaaagcaaccgaagcagcgaaaaatgtaaatggaaaacgtacagccacc
acatcggatcttagcaaattaagcgaatcgaaacgaaaaaagaaagaagaagcaacggcc
aagaaaacaccatcacaaatggccaaacaaaaggttcgtgatcatcaagagaagatttca
ttccttcgtgccaaagctagtaaaattgcacacaaaaccaaacgaattcggcaaattgac
gaaatgaacaatgatcgacacatggcaaataataaaaataaacgagtatcaaaattctcg
gttgatttaaccaataccagtcgtcgtaataccaagaaacttaggtacgatgccaattca
cacaagaaaacgcaaaaattggatgccaagaagaagacaagcaaagttaaactcactaac
aaagctggcgaaaataagtttaacaaaggcaaaaactttcgtgcaccacgaaaaacaggc
aaaccaggaaagaaaaagtag
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