Contarinia nasturtii (swede midge): 116337855
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Entry
116337855 CDS
T08003
Name
(RefSeq) polypyrimidine tract-binding protein 1 isoform X1
KO
K13218
polypyrimidine tract-binding protein 1
Organism
cns
Contarinia nasturtii (swede midge)
Brite
KEGG Orthology (KO) [BR:
cns00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cns03019
]
116337855
03041 Spliceosome [BR:
cns03041
]
116337855
Messenger RNA biogenesis [BR:
cns03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
116337855
Spliceosome [BR:
cns03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
116337855
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_5
RRM_1
RRM_8
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
116337855
NCBI-ProteinID:
XP_031618651
LinkDB
All DBs
Position
Unknown
AA seq
562 aa
AA seq
DB search
MRGSDELLSQAAVMAPASDNNNQDLATKKAKLDSTSTVLGGVGKPSRVIHIRNIPNDSSE
SEVIQLGLPFGRVTNVLVLKGKNQAFLEMADEVCAAAMVACFNTNPPQVRGRTVYVQFSN
HRELKIDQSHSVINASVALQSQDFQVASPASGSPLPISGTDPVSHGVHQTISTTGGQNTV
LRVIVESLLYPVSLDILHQIFQRFGKVLKIVTFNKNNSFQALIQYPDAQTAQHARAVLDG
QNIYNGCCTLRIDNSKLTALNVKYNNDKSRDFTNPSLPPGDPGSEVIASAGGLVNASDLL
LIAARQRPTITVNGLGAPSVIPPFALGLGTPLTTGAYGSAIPSLGAFALATTTGIGQTNP
TSLRGISNVLLVSNLNEEMVTPDALFTLFGVYGDVQRVKILYNKKDSALIQMAEQHQAYL
AMTHLDKLRLWGKAIRVMASKHQAVQLPKEGQPDAGLTRDYAQNPLHRFKKPGSKNYQNI
YPPSATLHLSNIPTTVSEEDIREAFTKNSFEVKAFKFFPKDRKMALLQLSSVDEAVLALM
KMHNYQLSDSNHLRVSFSKSNI
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgcgaggtagcgacgaattgctcagtcaagcagcagtgatggcgcccgcttcagataat
aacaatcaagatttagcaaccaaaaaggccaaattagattcaacatcaacagttttgggt
ggtgttggaaaaccgtcgagagtaatacacatcaggaatataccaaatgattcaagcgaa
tccgaagtcatacaattgggtttgccgtttggtcgggttacaaatgtactcgtgctgaag
ggtaaaaaccaagcattcttggaaatggcagatgaggtatgtgctgctgcaatggttgcc
tgcttcaatacgaatccacctcaggtccgaggccgaactgtctacgtacaattctcaaac
catcgcgaactaaaaattgatcagagtcattcggttattaatgcatcagtagcattacaa
agtcaagacttccaggtagcatcaccagcatccggttcacctctgccaatatctggaacg
gatccagtatcacatggtgttcatcaaacaatatcaactactggcggccaaaataccgtt
ttacgtgtgatagtggaatcactattgtatcccgtatcgttggacattctgcatcaaata
tttcaacgcttcggcaaagtgctgaaaatagtcacattcaacaaaaataattcattccaa
gccctgattcagtatccagatgctcaaactgctcaacatgcgagagctgttttagatggt
caaaatatttataacggttgctgcacattacggatcgataacagcaaactgacagcctta
aatgtaaaatataataatgacaaatcacgtgatttcacaaatccatcgctgccacccggt
gatcctggctcagaagtaatcgctagtgctggaggtcttgtcaatgcaagcgatctatta
ttgattgcggcacgacaacggccaaccataacagtaaatggtttgggtgcaccgagtgtg
ataccaccatttgctttaggtttaggtacaccattgacaactggcgcatacggaagtgca
attccaagtcttggagcgttcgcattggcaacgactacaggcatcggtcaaacaaatccc
acatcgctcagaggaatatcaaacgttttactcgtttccaatctcaacgaagagatggtc
acgcctgatgctctatttaccctctttggtgtctatggtgatgtacaacgtgtaaaaatt
ctgtacaacaaaaaggactcggcactaattcaaatggctgaacaacatcaggcgtatttg
gcaatgactcatttggataagcttcgtctatggggtaaagcaattcgagtaatggctagt
aaacatcaagctgttcaactgccaaaagaaggtcaacctgatgctggcttaacgcgtgac
tatgcacaaaatccattgcacagatttaaaaagcctggcagcaaaaattatcaaaatatt
tatccaccatcagcaactttacatttaagcaacattccaactactgtatctgaagaagac
attcgagaagcattcacaaaaaatagctttgaagttaaagcatttaaattctttcctaag
gaccggaagatggctttgcttcagctgagctcagtggacgaagcggtattggctttaatg
aaaatgcacaattatcaattgtctgattcgaatcatttacgtgtcagtttttcgaaatca
aacatttaa
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