Contarinia nasturtii (swede midge): 116337963
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Entry
116337963 CDS
T08003
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A
KO
K12821
pre-mRNA-processing factor 40
Organism
cns
Contarinia nasturtii (swede midge)
Pathway
cns03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cns00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116337963
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cns03041
]
116337963
Spliceosome [BR:
cns03041
]
Complex A
U1 snRNP components
U1 related factors
116337963
Complex B
116337963
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
FF_PRPF40A
WW
WW_TCERG1
RhoGAP-FF1
CEP164_N
Motif
Other DBs
NCBI-GeneID:
116337963
NCBI-ProteinID:
XP_031618818
LinkDB
All DBs
Position
Unknown
AA seq
808 aa
AA seq
DB search
MNIPPGNVQPMPMAGNGFPVPVFSMPPPGFPPQTTCEWSEHKSPDGRTYYYNSITKQSAW
EKPDELKTNAEKLLSACPWKEYCSDNGKVYYYHVTTKESRWDIPSELEEIKNKIAEDERA
ANAARAMAALTSSTMSGVFPPIAAAMPMIPPMASVPPILQTKVNTSNPSSPAENGVDSNE
NSSSALDQAMAATLAAIEVPEPQDKNDVDADVNKSIPSPDQPKVEFKDKKEAVEAFKELL
REKNIPSNSTWDNCMKIISKDPLYANFKNLNERKQAFNSYKAQKLKDEREEQRLRAKKAK
EDLEKFLMNCDKISSSTKYYKCDEIFANQKIWTNVPDQDRRDIYEDCMFNLAKREKEEAR
VMKKRNMRVLSEVLESMTSITYQTTWSEAQVMLLENSAFKNDVNLLGMDKEDALIVFEEH
IRTQEREEIEEKDHEKKRTKRLQRKSRDAFLALLDSLHEEGKLTSMSLWVELYPLISADL
RFSAMLGQPGSTPLDLFKYYVENLKARFHDEKKIIKEILKESDFTVKADTTFEQFATVVC
EDKRSASLDAGNVKLTYNAMLEKAEAIQKERMREESKRLRKLENELKQNWLDAGLTSESS
WETAKKVVINTETYDAYEKEGSAENLWEDFIRESEDLCTHHHSKSKKNKKNKKHKKRSRS
SSKSGSEQSDVEYEKVKKSKRSRSRSRSTSTISSSSEKRKKSKKKKHRKHSRSVSYESPM
HVQSSDKFSPMLEPLSPTTPEKKKKKKDKKKKDKERRRSISGTPPPISTSNRDDSPSTKN
TDDQALSESELESRRAALLAQLNMQIDE
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atgaatattccgccgggaaacgttcaaccaatgccgatggcaggaaatggttttcccgtt
ccggtgtttagtatgccaccgccggggtttccaccacaaacaacttgtgagtggtctgag
cataaatcaccggatggtcgtacctattattataacagcattaccaagcaaagtgcttgg
gaaaagccagatgaactgaaaacaaatgctgaaaaattattatctgcttgcccgtggaaa
gagtattgttctgataatggaaaagtctattattaccatgtgacaacgaaagaatcacga
tgggacattccatccgaactagaagaaattaaaaacaaaattgccgaagacgaacgggca
gcaaatgcggcacgggcaatggcagcattgacatcgtcaacgatgtctggtgtttttcct
ccaattgcggctgcaatgccaatgattccaccaatggccagtgtccctccaattctccaa
acaaaagtcaatacatcaaatccaagttcgccagcagaaaatggagttgactccaatgaa
aattcatcatctgcattagatcaagcaatggcagccactctggccgccattgaagtccct
gaaccacaagataaaaatgatgttgatgctgacgtcaataaatcaattccaagtccagac
cagccaaaagttgaattcaaagataaaaaagaagcggttgaagcattcaaagagctgctt
agagaaaagaatataccatcgaattcaacgtgggataattgtatgaagattatttcgaaa
gatccactttatgcaaattttaagaatttaaatgaaagaaaacaagcgttcaattcgtac
aaagcacaaaaattaaaagatgaacgtgaagagcagcgtctcagagcgaaaaaagcaaaa
gaagatttagaaaaatttctcatgaactgtgacaaaatatcatcgagcacaaaatattac
aaatgtgacgagatttttgccaatcagaaaatttggacgaatgtacccgatcaagatcgt
cgtgatatttatgaggattgtatgtttaatttagctaagcgtgaaaaagaagaggcacga
gtgatgaaaaaacgaaatatgcgagttttatcggaagtgcttgaatcaatgacatcaatt
acttaccaaacgacttggtcagaagctcaagttatgttactcgaaaattctgcatttaaa
aatgacgtcaatttacttggaatggataaagaagatgcactaattgtatttgaagaacat
atacgaactcaagagcgcgaagagattgaagaaaaagatcatgaaaagaaacgaaccaaa
cgattgcaacgtaaaagccgtgatgcatttttggcattgctggattcattgcatgaagaa
ggaaagcttacttcaatgtctttgtgggttgagttatatccattgatttcagccgatctg
agattttctgcaatgctcggtcaaccaggatcgacgccactagatttatttaaatattat
gtagaaaatctcaaagccagattccacgacgagaagaaaatcattaaagaaattctaaaa
gagtccgattttacggtcaaggctgacacaactttcgaacagtttgcaacggttgtatgc
gaagataagcggtcagcatcactggatgctggaaatgttaaactaacttacaatgcaatg
cttgagaaagctgaagcaattcaaaaagaacgtatgcgcgaagaatcgaaacgattgcgc
aaacttgagaatgaactgaagcaaaattggcttgatgccggtctcacatctgaatccagt
tgggaaacagcgaagaaagtggttatcaacacagaaacatatgatgcatatgaaaaagag
ggatcagctgaaaacctatgggaagattttattcgcgaaagtgaagatttgtgcacacac
catcattcaaaatcgaaaaagaataagaagaataaaaaacataagaaacgctcacgatcg
agctcgaaatcgggttctgaacagtcggacgtcgaatatgaaaaagtaaaaaaatcgaaa
cgatcaaggtcacgttcccgatccaccagcacgataagttcatctagtgaaaaacgaaag
aagtccaaaaagaagaagcaccgcaaacactcccgatcggtatcatacgagtcaccaatg
catgtgcaatcgtccgataaattttcgccgatgcttgaaccgctatcaccaacaacacca
gaaaaaaagaaaaagaagaaggataaaaagaaaaaggacaaagaacgaaggcgatcaata
agcggaacaccacctccaatatctacatcaaatcgagatgattcaccgtcgaccaaaaac
actgacgatcaagcgcttagcgaatctgaattggaatcaagacgagctgccctattggcc
cagcttaatatgcaaatcgatgaatag
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