Contarinia nasturtii (swede midge): 116337996
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Entry
116337996 CDS
T08003
Name
(RefSeq) probable ATP-dependent RNA helicase DDX28
KO
K20096
ATP-dependent RNA helicase DDX28 [EC:
5.6.2.7
]
Organism
cns
Contarinia nasturtii (swede midge)
Brite
KEGG Orthology (KO) [BR:
cns00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cns03009
]
116337996
Enzymes [BR:
cns01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116337996
Ribosome biogenesis [BR:
cns03009
]
Eukaryotic type
Other ribosome biogenesis factors
116337996
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
AAA_22
P-loop_SecA
TrbI_Ftype
Motif
Other DBs
NCBI-GeneID:
116337996
NCBI-ProteinID:
XP_031618864
LinkDB
All DBs
Position
Unknown
AA seq
525 aa
AA seq
DB search
MLKIRSLEWSTSRALSFYKNVIKTKKPIIKHIGEPLITCRRPEFNLHCGDKKDENAKFGS
IPLTSDGWHHYKSKGDFFIIHPENSIEDVTQKPEYNQSFENYDIHPELCINLGGRLNMSR
TTFIQHKAMPMILDNQHTLIAAETGCGKTIAYLLPIIQNVLKRKHTIDKDEPPEFNMPKV
LIITPGRELATQIGEVCEDLCHGLDVKTKVLIGGHTKSIMMNPPINQIDILIATMGSLSK
LITTNIYRMDKVRHVVLDEADTLLDDSFSGKLRYILKRFPFHKNVKRCEPNEVATQLVLA
SATMPTNISNSLESIIDPSTINEAVSPYLHKIMPNITQKFIRMRKSHRPAELLKIIKKDL
DRKRPVIVFSNKRESSDFVSIFLNDHDIEACSMNNSLIEKIRRQQFKKFQSGQVNVLSTT
DLASRGLDTKRACHVINFEFPMYISDYIHRCGRIGRYTSETNCQVTNFISGMNQLNLVRK
IEHAVRTKGILPDVNANVTKIITDKVRKEIENEERAMLADIKNKP
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atgttaaaaattcgctcactcgagtggagtacatctcgggcgttgtccttttacaaaaat
gtgataaaaacgaaaaaacctatcatcaaacacatcggagaacccttgataacttgtcga
cggccagaatttaatttacattgcggcgataaaaaagatgaaaatgcaaaatttggatcc
atacctctcacatcggatggttggcatcactataaatccaaaggagatttcttcataatt
catccagaaaattcaatcgaagatgtcacacaaaaaccggagtataatcaatcattcgaa
aattatgatatacatcctgagctttgcatcaatttgggcggtcggttgaatatgtcacga
acaacatttattcaacacaaagctatgccaatgattttagataatcaacatactttaatt
gcggctgaaacaggatgcggaaaaacaatcgcttatttattgccaatcatccaaaatgta
ttgaaacgaaaacatacaattgataaagatgaaccgcctgaattcaatatgccaaaagta
ttaattatcacaccgggacgagaattggcaacacaaattggcgaagtgtgcgaagacctg
tgtcatggtcttgacgtaaaaacaaaagttctaattggcggtcatacaaaatcaattatg
atgaatccgcccatcaatcaaatcgatattttgattgcaacaatgggatcgctaagcaaa
ttaataacaacaaatatctaccgaatggataaggttcggcatgttgttctcgatgaagcc
gatacattgttggacgacagtttttccggaaaattaagatacattttgaaacggtttccg
tttcataagaatgtgaaaagatgcgaaccaaatgaagtagcaacacaattggtacttgcc
tcagccacaatgccaacaaatataagcaattcattggaatcgattattgatccaagcaca
ataaatgaagccgttagcccatatttacacaaaatcatgccaaatatcacacagaaattt
atccgaatgcgtaaatcacatcgtccagccgaattgctcaagatcattaaaaaagatctt
gaccgaaaacgaccggtcattgttttttctaataagcgtgaatcatcggattttgtttcg
atttttcttaacgatcatgacatcgaagcgtgctcaatgaataattcgctaatcgaaaaa
attcgacgtcaacaatttaaaaaatttcaatcgggacaagttaacgttttatcaacaaca
gatctggccagccggggacttgatacaaaacgagcctgtcatgtgatcaacttcgaattt
cctatgtatatttcggactatattcatcgatgcggtcgaattggacgttataccagtgaa
acaaattgtcaagttacaaattttataagcggaatgaatcaattaaatttggttagaaaa
atcgaacatgctgttcgaacgaagggtattctacctgatgtaaatgctaatgtgaccaaa
attataactgataaagttaggaaggaaattgaaaatgaagagagagccatgctcgcagat
ataaagaataaaccatag
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