Contarinia nasturtii (swede midge): 116338026
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Entry
116338026 CDS
T08003
Name
(RefSeq) CCR4-NOT transcription complex subunit 3
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
cns
Contarinia nasturtii (swede midge)
Pathway
cns03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cns00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116338026
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cns03019
]
116338026
Messenger RNA biogenesis [BR:
cns03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116338026
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
116338026
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5646
DUF4768
Motif
Other DBs
NCBI-GeneID:
116338026
NCBI-ProteinID:
XP_031618912
LinkDB
All DBs
Position
Unknown
AA seq
829 aa
AA seq
DB search
MAATRKLQGEIDRCLKKVTEGVDTFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRD
QIKSWIASAEIKDKSSLLENRRLIETQMERFKVVERETKTKAYSKEGLGAAQKLDPAQRV
KDEVRQWLTTSISALQIQIELYESEMESLVVGKKKRLDKDKQDRMDDLKTKFERHKFHIA
KLETLLRMLDNDSVEVEQVRRIKDDVEYYIESSQEPDFEENSYMYDDIIGLDEVELSGGN
LPSTTDSNNSNDTGDSPSSLISGSSPVVSPTNFNHINESTSVEFNEKKGKSDNLTIGSKV
TPVKPTAVRANKSDLNSTLNSTSSTQSKTVCSTPIKNQSHNNSPATPISAQLNTSGVSTT
PSTISSAIVTSTASTVSSGASSQNQSSSARDENHSHANKQTILTRDQQPIQNSIIPTTAS
VAFAAVAKHSTSQHTTNEGQLYSAFASTAISTATSHTNQTASHQASSVINPSQQQQSNAE
NGAVRQSNIQNNNTSSSNSVVTSQHQGLLTSVTSGNNVPSALDSHAIFTSITNNNLTTTS
TTINNSITNSVSPTNSIISSALGNLKQPQIVPNSLANTDSMSTLKTIAQEAINRATGLDN
NSILSSSNLQTSTSLASTLVDSRVQLFSNDTNMQTNGPHSGSNHNNNAINANSLLKTNVI
GTGTNEAHIPPLLGVAPLGPCPLKKEHQLQFQMMEAAEYHLPTPMDSERLRTYLQRQPVQ
TPASYPQNQLPHSDTFEFFQRLSTETLFFIFYYMEGTKAQFLAAKALKKQSWRFHTKYMM
WFQRHEEPKIINEEFEQGTYIYFDYEKWGQRKKEGFTFEYKYLEDRDLN
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
atggctgcgacgcgaaagttgcaaggtgaaatagacagatgcctgaaaaaagtaacagaa
ggagttgatacatttgaggatatttggcagaaagtccacaatgctacgaatagtaaccaa
aaggagaaatatgaagcggatcttaaaaaagaaatcaaaaagttgcaacggttgcgcgat
cagattaaatcatggattgccagcgctgagatcaaagataaaagttccctgctcgaaaat
cgaaggcttatcgaaacgcaaatggaacgtttcaaagtggtggaacgagaaacaaaaacg
aaagcctattcaaaagaaggtcttggtgccgcacaaaaactggatcctgctcaacgtgta
aaagacgaggtgcgacagtggttaacaacatcgattagtgctcttcagatacaaatcgag
ttgtatgaaagtgagatggaatctctagtagtgggcaagaagaagcgactcgacaaagac
aaacaagatcgaatggatgatttaaaaacaaaatttgaacgacacaaatttcacatagca
aaactggaaacactgcttcgtatgcttgataatgacagtgttgaagtggaacaagtgcgg
cgtattaaagacgatgtggagtattatattgaatcatcacaagagccggactttgaagaa
aattcatacatgtacgacgacatcatcggcctggatgaggtagaattgtccggtggcaat
ttaccatcaacgactgatagcaataacagcaacgatacaggcgattcaccaagcagtctg
atctctggctcaagtccggttgtttcgccgactaatttcaatcacatcaatgaatcaacc
tccgtggaattcaatgagaagaaaggaaaaagcgataacttgaccattggaagtaaagta
acacccgtaaaaccgacggcagttcgcgccaacaaatcggatctgaactccacactgaat
agtacgtcgtcgacacaaagcaagactgtgtgttcaacgcctattaagaatcaatcgcat
aataattcgcccgcaacacccatttcagcacaactgaatacatctggagtgtcaacgaca
ccgtcaacaatttcaagcgctatagtcacatcaacggctagtacggtcagtagcggtgcc
tcttcacaaaatcaatcatcttcggcgcgtgatgaaaaccattctcatgcaaataaacaa
accattttaacacgagatcaacaacctatacaaaacagcataattccgacaactgcctcc
gttgcgtttgctgccgttgcaaaacacagtacatcacagcacacaacaaacgaaggtcaa
ctatattcagcatttgcatcgacagctatctctacggcaacgagtcatacgaatcagact
gcctcgcatcaagcatcgtctgtgataaatccatcacaacaacagcaatcgaatgccgaa
aacggagctgtacgacaaagcaacattcaaaataacaatacaagcagtagcaatagtgta
gttacatcgcaacaccagggtttgctgacatcggtaacgagcggcaacaatgtccctagt
gcacttgacagtcatgcgattttcacttccattacaaataacaacctaactacaacatca
acaaccataaacaattcgattacgaattcagtatctccgaccaattccattatttcgtca
gcgttgggaaatcttaagcaaccgcaaattgttccgaattcattggccaatacggattcg
atgtcaacgctcaaaacgattgcccaagaagcaatcaatcgcgcaactggtctcgataac
aactcaatattatcatcatcgaatttgcaaacgagtacatcattagcatcaacgcttgtg
gatagccgtgtgcagttattttccaacgacacaaatatgcaaacaaatggaccacatagt
gggtccaatcataataacaatgcaataaatgcgaatagtttgctaaaaacaaatgtcatt
ggaaccggtacaaatgaagcgcatataccaccgctgttaggtgttgcaccgcttggccca
tgcccgctgaaaaaagagcaccaactacaattccaaatgatggaagcagctgaataccat
ttaccgactcccatggattcagaacgacttcggacctatcttcaaagacaaccagttcaa
acgccagcaagttatcctcagaatcaattaccacattcggatacatttgaatttttccaa
cgtctttctacggaaactctattttttatattttactacatggaaggaacaaaggcgcaa
ttcttggcggcaaaagcgttgaaaaaacaaagctggagattccatacaaagtacatgatg
tggttccaacgacatgaggaaccaaaaatcatcaatgaagaattcgaacagggcacttac
atttatttcgactacgaaaaatggggccaacgcaagaaggaaggttttacgtttgaatat
aagtacttagaagacagggacctgaattga
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