Contarinia nasturtii (swede midge): 116338322
Help
Entry
116338322 CDS
T08003
Name
(RefSeq) ATP-dependent RNA helicase WM6
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
cns
Contarinia nasturtii (swede midge)
Pathway
cns03013
Nucleocytoplasmic transport
cns03015
mRNA surveillance pathway
cns03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cns00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116338322
09122 Translation
03013 Nucleocytoplasmic transport
116338322
03015 mRNA surveillance pathway
116338322
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cns03019
]
116338322
03041 Spliceosome [BR:
cns03041
]
116338322
Enzymes [BR:
cns01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116338322
Messenger RNA biogenesis [BR:
cns03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
116338322
Spliceosome [BR:
cns03041
]
Complex C
Other components
EJC/TREX
116338322
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
116338322
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-GeneID:
116338322
NCBI-ProteinID:
XP_031619345
LinkDB
All DBs
Position
Unknown
AA seq
423 aa
AA seq
DB search
MADNDDLLDYEDEEQTEQVVAETTEAPKKDVKGTYVSIHSSGFRDFLLKPEILRAIADCG
FEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPTENHTYVLVMCHTRE
LAFQISKEYERFSKYMPALKVGVFFGGLPIQKDEETLKTMTPHIVVGTPGRILALIRNKK
LNFKHLKHFILDECDKMLEQLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQ
DPMEVYVDDETKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVQRCMALA
QLLTEQNFPAIGIHRGMGQEERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYDM
PEDSDTYLHRVARAGRFGTKGLAITFVSDEGDAKILNEVQDRFDVNITELPDEIDLSSYI
EGR
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atggccgacaacgatgatcttttggattatgaagatgaagagcaaaccgaacaagttgtt
gcggagacaactgaagcaccgaaaaaagatgtgaaaggtacttatgtatcaattcacagt
tcgggctttcgtgattttctcttgaaaccagaaattcttcgtgcaatcgccgactgtggt
tttgaacatccatctgaagttcaacacgaatgtattccccaagctgttcttggaatggac
attttgtgccaagccaaatcaggtatgggcaaaactgctgtgttcgttttggctactttg
caacaattggaaccaacggaaaatcatacttatgtattggtcatgtgccatactcgtgag
ttggctttccaaattagcaaagagtatgagcgtttctcaaagtatatgccagcattgaaa
gttggcgtattcttcggtggtttaccaattcaaaaagacgaagagactctgaagacgatg
acaccacacatcgttgttggtacgcctggtcgaattttggctcttattcgcaacaagaaa
ctcaacttcaagcacttgaaacattttattttggatgaatgtgacaaaatgttggaacaa
ttggatatgcggcgcgacgtacaagaaattttccgcaatactccgcacggaaaacaagtc
atgatgttttcggctacattaagcaaagaaattcgccccgtctgcaagaaattcatgcaa
gatccaatggaagtctacgtcgatgatgagaccaaattgactttacacggtttgcagcag
cactatgtcaaattgaaggagaacgaaaagaacaagaagctatttgaattgttggacgta
ctagaattcaatcaagtggtgattttcgtgaaatcggtacaacgttgcatggcattggca
caattgttgaccgagcagaatttcccagccatcggaattcatcgtggcatgggccaagaa
gagagattgtcacgttatcagcaattcaaagattttcagaagcggatcttggttgcaacc
aatttattcggtcggggtatggatattgagcgagtcaatattgtcttcaattacgatatg
ccagaggattccgacacctacttgcatcgtgtagctcgtgctgggcgattcggtaccaaa
ggattagccatcaccttcgtttcagatgagggcgatgccaagattttgaatgaagttcaa
gatcgtttcgatgtcaacatcacggaattgcctgatgaaatcgatctctcatcgtacatc
gaaggacgataa
DBGET
integrated database retrieval system
